Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_H16
         (957 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    35   0.019
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 34.7 bits (76), Expect = 0.019
 Identities = 19/63 (30%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
 Frame = -2

Query: 761 GGGXKXIPGXPXPPXXXGXXXXPXPGGGXXFXTPPPP---AXXXXXXPPLAGGXKXXFPP 591
           G     +P  P PP        P P  G     PPPP          PPL+       PP
Sbjct: 330 GSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPP 389

Query: 590 YPP 582
            PP
Sbjct: 390 APP 392



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
 Frame = -2

Query: 662 PPPPAXXXXXXPPLA-GGXKXXFPPYPP 582
           PPPP+      PP+  G      PP PP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPP 341



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 23/82 (28%), Positives = 25/82 (30%), Gaps = 1/82 (1%)
 Frame = -1

Query: 825 RVXPPGXXPQRAPRXGXWGXXRXGXKXNSXXPXPPPXXXDXXXP-XPGGGXXFFXXPPPS 649
           R  PP   P+ AP  G         +  S  P PPP       P  P  G       PP 
Sbjct: 358 RSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPV 417

Query: 648 XXXXXXPPPGXGXKKXIPXLPP 583
                 PP         P LPP
Sbjct: 418 PTPPSLPPSAP------PSLPP 433


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/53 (30%), Positives = 19/53 (35%)
 Frame = -2

Query: 743 IPGXPXPPXXXGXXXXPXPGGGXXFXTPPPPAXXXXXXPPLAGGXKXXFPPYP 585
           IP  P  P   G    P P G      PPPP       P ++ G    + P P
Sbjct: 749 IPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP----PPPPAVSAGGSRYYAPAP 797


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,554,847
Number of Sequences: 5004
Number of extensions: 17516
Number of successful extensions: 41
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)