Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_H16
(957 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 41 0.001
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 41 0.001
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 41 0.001
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.30
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.30
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.30
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 32 0.70
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 0.92
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.1
U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protei... 30 2.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.1
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 29 4.9
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 4.9
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 4.9
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 4.9
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 4.9
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 29 6.5
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 6.5
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 29 6.5
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 29 6.5
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 28 8.6
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 28 8.6
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 28 8.6
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 28 8.6
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 28 8.6
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 28 8.6
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/63 (38%), Positives = 26/63 (41%)
Frame = -2
Query: 758 GGXKXIPGXPXPPXXXGXXXXPXPGGGXXFXTPPPPAXXXXXXPPLAGGXKXXFPPYPPX 579
GG PG P P G P PGG PPP PP++GG PP PP
Sbjct: 711 GGPPPPPGLP--PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGP----PPPPPP 764
Query: 578 XGG 570
GG
Sbjct: 765 PGG 767
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/59 (38%), Positives = 23/59 (38%)
Frame = -2
Query: 758 GGXKXIPGXPXPPXXXGXXXXPXPGGGXXFXTPPPPAXXXXXXPPLAGGXKXXFPPYPP 582
GG I G P PP G P GG PPP PP GG K PP PP
Sbjct: 733 GGLPPITGGPPPPPPPGGL--PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 31.5 bits (68), Expect = 0.92
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -2
Query: 761 GGGXKXIPGXPXPPXXXGXXXXPXPGGGXXFXTPPPPAXXXXXXPP 624
GG P PP G P P GG PPPP PP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/58 (31%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Frame = -2
Query: 758 GGXKXIPGXPXPPXX--XGXXXXPXPGGGXXFXTPPPPAXXXXXXPPLAGGXKXXFPP 591
GG I G P PP G P P F PPP P+A PP
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPP 806
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/63 (38%), Positives = 26/63 (41%)
Frame = -2
Query: 758 GGXKXIPGXPXPPXXXGXXXXPXPGGGXXFXTPPPPAXXXXXXPPLAGGXKXXFPPYPPX 579
GG PG P P G P PGG PPP PP++GG PP PP
Sbjct: 711 GGPPPPPGLP--PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGP----PPPPPP 764
Query: 578 XGG 570
GG
Sbjct: 765 PGG 767
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/59 (38%), Positives = 23/59 (38%)
Frame = -2
Query: 758 GGXKXIPGXPXPPXXXGXXXXPXPGGGXXFXTPPPPAXXXXXXPPLAGGXKXXFPPYPP 582
GG I G P PP G P GG PPP PP GG K PP PP
Sbjct: 733 GGLPPITGGPPPPPPPGGL--PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 31.5 bits (68), Expect = 0.92
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -2
Query: 761 GGGXKXIPGXPXPPXXXGXXXXPXPGGGXXFXTPPPPAXXXXXXPP 624
GG P PP G P P GG PPPP PP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/58 (31%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Frame = -2
Query: 758 GGXKXIPGXPXPPXX--XGXXXXPXPGGGXXFXTPPPPAXXXXXXPPLAGGXKXXFPP 591
GG I G P PP G P P F PPP P+A PP
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPP 806
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/63 (38%), Positives = 26/63 (41%)
Frame = -2
Query: 758 GGXKXIPGXPXPPXXXGXXXXPXPGGGXXFXTPPPPAXXXXXXPPLAGGXKXXFPPYPPX 579
GG PG P P G P PGG PPP PP++GG PP PP
Sbjct: 294 GGPPPPPGLP--PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGP----PPPPPP 347
Query: 578 XGG 570
GG
Sbjct: 348 PGG 350
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/59 (38%), Positives = 23/59 (38%)
Frame = -2
Query: 758 GGXKXIPGXPXPPXXXGXXXXPXPGGGXXFXTPPPPAXXXXXXPPLAGGXKXXFPPYPP 582
GG I G P PP G P GG PPP PP GG K PP PP
Sbjct: 316 GGLPPITGGPPPPPPPGGL--PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 372
Score = 31.5 bits (68), Expect = 0.92
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -2
Query: 761 GGGXKXIPGXPXPPXXXGXXXXPXPGGGXXFXTPPPPAXXXXXXPP 624
GG P PP G P P GG PPPP PP
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 368
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/58 (31%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Frame = -2
Query: 758 GGXKXIPGXPXPPXX--XGXXXXPXPGGGXXFXTPPPPAXXXXXXPPLAGGXKXXFPP 591
GG I G P PP G P P F PPP P+A PP
Sbjct: 332 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPP 389
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.1 bits (72), Expect = 0.30
Identities = 21/57 (36%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = -2
Query: 737 GXPXPPXXXGXXXXPXPGGGXXFXT--PPPPAXXXXXXPPLAGGXKXXFPPYPPXXG 573
G P PP G P G T PPPP PP AG PP PP G
Sbjct: 253 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP----PPPPPPRG 305
Score = 30.3 bits (65), Expect = 2.1
Identities = 23/87 (26%), Positives = 26/87 (29%), Gaps = 2/87 (2%)
Frame = -1
Query: 876 GGXXAPPXXXXGRXXGXRVXPPGXXPQRAPRXGXWGXXRXGXKXNSXXPXPPP--XXXDX 703
G PP G R P P +P G + S P PPP
Sbjct: 251 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG 310
Query: 702 XXPXPGGGXXFFXXPPPSXXXXXXPPP 622
P P G PPP+ PPP
Sbjct: 311 SLPPPQAG----GSPPPAGTGSPPPPP 333
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = -2
Query: 737 GXPXPPXXXGXXXXPXPGGGXXFXTPPPPAXXXXXXPPLAGGXKXXFPPYPPXXGG 570
G P PP P P GG +PPPP PP G PP GG
Sbjct: 270 GSPPPPPTGSPP--PPPAGG----SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGG 319
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.1 bits (72), Expect = 0.30
Identities = 21/57 (36%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = -2
Query: 737 GXPXPPXXXGXXXXPXPGGGXXFXT--PPPPAXXXXXXPPLAGGXKXXFPPYPPXXG 573
G P PP G P G T PPPP PP AG PP PP G
Sbjct: 274 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP----PPPPPPRG 326
Score = 30.3 bits (65), Expect = 2.1
Identities = 23/87 (26%), Positives = 26/87 (29%), Gaps = 2/87 (2%)
Frame = -1
Query: 876 GGXXAPPXXXXGRXXGXRVXPPGXXPQRAPRXGXWGXXRXGXKXNSXXPXPPP--XXXDX 703
G PP G R P P +P G + S P PPP
Sbjct: 272 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG 331
Query: 702 XXPXPGGGXXFFXXPPPSXXXXXXPPP 622
P P G PPP+ PPP
Sbjct: 332 SLPPPQAG----GSPPPAGTGSPPPPP 354
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = -2
Query: 737 GXPXPPXXXGXXXXPXPGGGXXFXTPPPPAXXXXXXPPLAGGXKXXFPPYPPXXGG 570
G P PP P P GG +PPPP PP G PP GG
Sbjct: 291 GSPPPPPTGSPP--PPPAGG----SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGG 340
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.1 bits (72), Expect = 0.30
Identities = 21/57 (36%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = -2
Query: 737 GXPXPPXXXGXXXXPXPGGGXXFXT--PPPPAXXXXXXPPLAGGXKXXFPPYPPXXG 573
G P PP G P G T PPPP PP AG PP PP G
Sbjct: 259 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP----PPPPPPRG 311
Score = 30.3 bits (65), Expect = 2.1
Identities = 23/87 (26%), Positives = 26/87 (29%), Gaps = 2/87 (2%)
Frame = -1
Query: 876 GGXXAPPXXXXGRXXGXRVXPPGXXPQRAPRXGXWGXXRXGXKXNSXXPXPPP--XXXDX 703
G PP G R P P +P G + S P PPP
Sbjct: 257 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG 316
Query: 702 XXPXPGGGXXFFXXPPPSXXXXXXPPP 622
P P G PPP+ PPP
Sbjct: 317 SLPPPQAG----GSPPPAGTGSPPPPP 339
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = -2
Query: 737 GXPXPPXXXGXXXXPXPGGGXXFXTPPPPAXXXXXXPPLAGGXKXXFPPYPPXXGG 570
G P PP P P GG +PPPP PP G PP GG
Sbjct: 276 GSPPPPPTGSPP--PPPAGG----SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGG 325
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.9 bits (69), Expect = 0.70
Identities = 24/87 (27%), Positives = 26/87 (29%), Gaps = 2/87 (2%)
Frame = -1
Query: 873 GXXAPPXXXXGRXXGXRVXPPGXX--PQRAPRXGXWGXXRXGXKXNSXXPXPPPXXXDXX 700
G APP G PP PQ G +G G PP
Sbjct: 376 GNFAPPPQSG--PPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGF 433
Query: 699 XPXPGGGXXFFXXPPPSXXXXXXPPPG 619
P P GG + PP PPPG
Sbjct: 434 GPPPPGGPGAYGPPPTGFPPVGAPPPG 460
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/60 (33%), Positives = 20/60 (33%)
Frame = -2
Query: 770 GXXGGGXKXIPGXPXPPXXXGXXXXPXPGGGXXFXTPPPPAXXXXXXPPLAGGXKXXFPP 591
G GG PG P P G P GG PPPP PP G PP
Sbjct: 404 GGPGGYGPPPPGGPGAPGSYGP-----PQGGPGGFGPPPPGGPGAYGPPPTGFPPVGAPP 458
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Frame = -2
Query: 737 GXPXPPXXXGXXXXPXPGG-GXXFXTPPPPAXXXXXXPPLAGGXKXXFPP---YPP 582
G P P G P PGG G PP PP GG PP +PP
Sbjct: 398 GAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPP 453
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.5 bits (68), Expect = 0.92
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = -2
Query: 740 PGXPXPPXXXGXXXXPXPGGGXXFXTPPPPAXXXXXXPPLAGGXKXXFPPYPPXXG 573
P PP P PG G PP A PP+ GG PP PP G
Sbjct: 61 PSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGG----IPPPPPMFG 112
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/55 (30%), Positives = 18/55 (32%)
Frame = -2
Query: 737 GXPXPPXXXGXXXXPXPGGGXXFXTPPPPAXXXXXXPPLAGGXKXXFPPYPPXXG 573
G PP G P P PPP PP+ G PP PP G
Sbjct: 72 GFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAP----PPPPPPSG 122
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -2
Query: 755 GXKXIPGXPXPPXXXGXXXXPXPGGGXXFXTPPPPA 648
G +PG P P G P GGG PP PA
Sbjct: 142 GPAGVPGQPGPKGPNGNPGAPAQGGGQGPPGPPGPA 177
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Frame = -2
Query: 731 PXPPXXXGXXXXPXPGGGXXFXTPPPPAXXXXXXPPLAGGXKXXFPPY---PPXXGG 570
P PP P P + PPPP PP G PP PP GG
Sbjct: 276 PMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG 332
>U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protein
114 protein.
Length = 321
Score = 30.3 bits (65), Expect = 2.1
Identities = 24/69 (34%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Frame = -2
Query: 755 GXKXIPGXPXPPXXXGXXXXPXPGGGXXFXTP--PPPA--XXXXXXPPLAG---GXKXXF 597
G IPG P PP G P GG P PP A PP +G G K
Sbjct: 244 GDSGIPGPPGPPGMAGPDGIPGMGGAKGQNGPDGPPGASGESGPNGPPGSGGGAGEKGIC 303
Query: 596 PPYPPXXGG 570
P Y GG
Sbjct: 304 PKYCAIDGG 312
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Frame = -2
Query: 731 PXPPXXXGXXXXPXPGGGXXFXTPPPPAXXXXXXPPLAGGXKXXFPPY---PPXXGG 570
P PP P P + PPPP PP G PP PP GG
Sbjct: 286 PMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG 342
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = -2
Query: 755 GXKXIPGXPXPPXXXGXXXXPXPGGGXXFXTPPPPA 648
G PG P P G P GGG PP PA
Sbjct: 142 GPAGAPGQPGPKGPNGNPGAPAQGGGQGPPGPPGPA 177
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/61 (32%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Frame = -2
Query: 740 PGXPXPPXXXGXXXXPXPGGGXXFXTPP----PPAXXXXXXPPLAGGXKXXFPPYPPXXG 573
PG P P G P P G PP P PP A G PP PP
Sbjct: 212 PGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSG--PPGPPGPA 269
Query: 572 G 570
G
Sbjct: 270 G 270
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/58 (27%), Positives = 18/58 (31%)
Frame = -2
Query: 743 IPGXPXPPXXXGXXXXPXPGGGXXFXTPPPPAXXXXXXPPLAGGXKXXFPPYPPXXGG 570
+P P PP P PPPP P + G PP PP G
Sbjct: 608 VPPPPPPPPPQSFGMAPISSAAP----PPPPPPPPMGLPAVGAGAPPPPPPPPPSGAG 661
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/58 (27%), Positives = 18/58 (31%)
Frame = -2
Query: 743 IPGXPXPPXXXGXXXXPXPGGGXXFXTPPPPAXXXXXXPPLAGGXKXXFPPYPPXXGG 570
+P P PP P PPPP P + G PP PP G
Sbjct: 434 VPPPPPPPPPQSFGMAPISSAAP----PPPPPPPPMGLPAVGAGAPPPPPPPPPSGAG 487
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/61 (32%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Frame = -2
Query: 740 PGXPXPPXXXGXXXXPXPGGGXXFXTPP----PPAXXXXXXPPLAGGXKXXFPPYPPXXG 573
PG P P G P P G PP P PP A G PP PP
Sbjct: 212 PGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSG--PPGPPGPA 269
Query: 572 G 570
G
Sbjct: 270 G 270
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 405 PPPAPXTGKKXXXAIXXGXXXPPPPGXXXTP 313
P PAP G++ G PPPPG P
Sbjct: 769 PAPAPPGGRQAPMPPRGGPGAPPPPGMRPPP 799
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 405 PPPAPXTGKKXXXAIXXGXXXPPPPGXXXTP 313
P PAP G++ G PPPPG P
Sbjct: 769 PAPAPPGGRQAPMPPRGGPGAPPPPGMRPPP 799
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = -2
Query: 755 GXKXIPGXPXPPXXXGXXXXPXPGGGXXFXTPPPPA 648
G PG P P G P GGG PP PA
Sbjct: 140 GPAGAPGNPGPQGPNGNPGAPAHGGGQGPPGPPGPA 175
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 405 PPPAPXTGKKXXXAIXXGXXXPPPPGXXXTP 313
P PAP G++ G PPPPG P
Sbjct: 769 PAPAPPGGRQAPMPPRGGPGAPPPPGMRPPP 799
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 405 PPPAPXTGKKXXXAIXXGXXXPPPPGXXXTP 313
P PAP G++ G PPPPG P
Sbjct: 769 PAPAPPGGRQAPMPPRGGPGAPPPPGMRPPP 799
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = -2
Query: 761 GGGXKXIPGXPXPPXXXGXXXXPXPGGGXXFXTPPPPA 648
GGG G P PP P GGG PPPPA
Sbjct: 24 GGGGGCGCGAPPPPPACAPPPAPACGGG----APPPPA 57
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/59 (32%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Frame = -2
Query: 740 PGXPXPPXXXGXXXXPXPGGGXXFXTPP-PPAXXXXXXPPLAGGXKXXF-PPYPPXXGG 570
PG P P G P P G PP PP P G PP PP G
Sbjct: 217 PGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGVDGQSGPPGPPGPAG 275
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = -2
Query: 740 PGXPXPPXXXGXXXXPXPGGGXXFXTPPPPAXXXXXXPPLAGGXKXXFPPY 588
PG P PP P P G PPPP P A G P Y
Sbjct: 804 PGGPRPPYPY--PGGPVPPGPPQNRMPPPPPAQGAPSPSGAAGSNGKQPRY 852
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/69 (27%), Positives = 20/69 (28%), Gaps = 1/69 (1%)
Frame = -2
Query: 773 GGXXGGGXKXIPGXPXPPXXXGXXXXPXPGGGXXF-XTPPPPAXXXXXXPPLAGGXKXXF 597
G G PG PP G P P G P P P + G
Sbjct: 168 GDAGTNGAPGAPGGDAPPGEAGPKGPPGPPGSPGAPGEPGRPGDDAPSEPLIPGEPGPQG 227
Query: 596 PPYPPXXGG 570
PP PP G
Sbjct: 228 PPGPPGQAG 236
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -2
Query: 761 GGGXKXIPGXPXPPXXXGXXXXPXPGGGXXFXTPPPP 651
GG K PG P P G P GG PP P
Sbjct: 139 GGCIKCPPGRPGPKGPSGLPGSAGPAGGNGRRGPPGP 175
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -2
Query: 761 GGGXKXIPGXPXPPXXXGXXXXPXPGGGXXFXTPPPP 651
GG K PG P P G P GG PP P
Sbjct: 133 GGCIKCPPGCPGPKGPSGLPGSAGPAGGNGRRGPPGP 169
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Frame = -2
Query: 740 PGXPXPPXXXGXXXXPX-PGGGXXFXTPPPPAXXXXXXPP 624
PG P P G P PG +PPPP PP
Sbjct: 183 PGPPGPDGNAGPAGAPGVPGPDGDAGSPPPPGPPGPPGPP 222
Score = 28.3 bits (60), Expect = 8.6
Identities = 20/62 (32%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Frame = -2
Query: 770 GXXGGGXKXIPGXPXPPXXXGXXXXP-XPGGGXXFXTPPPPAXXXXXXP--PLAGGXKXX 600
G G PG P PP G P PGG P A P P GG
Sbjct: 267 GSGGAAQPGPPGPPGPPGNDGQPGGPGQPGGPGQDGGPGTDAAYCPCPPRTPAGGGGGGD 326
Query: 599 FP 594
FP
Sbjct: 327 FP 328
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,941,093
Number of Sequences: 27780
Number of extensions: 222017
Number of successful extensions: 1414
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2486134266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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