Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_H15
         (1101 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.50 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 15/51 (29%), Positives = 15/51 (29%)
 Frame = -3

Query: 829 PPPPPXXXXXVXXXXFXXXPPPXXXXXXXXXXXXXXPRGXKXRXPPPPPPP 677
           PPPPP              PPP                      PPPPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = -2

Query: 437 PPPXFXXPPQKIXPXXTPPPPXFXXXXXAXXPXFPPP 327
           P P    PP  I     PPPP          P  PPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/52 (26%), Positives = 14/52 (26%)
 Frame = -1

Query: 837 PXXPPPPPXXXXXXXXXXFXPXPPPXXPXXXXXXXXXXPRGGXXKEXPPPPP 682
           P  PPP                PPP  P            G      PPPPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.158    0.564 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,474,235
Number of Sequences: 5004
Number of extensions: 17821
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 581717144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)