Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_H14
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   1.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.7  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 463 GGXPPPPPPP 492
           GG PPPPPPP
Sbjct: 303 GGLPPPPPPP 312


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 463 GGXPPPPPPP 492
           GG PPPPPPP
Sbjct: 759 GGPPPPPPPP 768



 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +2

Query: 386 PXXGGGXPPPPXXXXXFFFFFXXXXGGXXPPPPPP 490
           P  GG  PPPP               G  PPPPPP
Sbjct: 756 PIMGGPPPPPPPP--------GVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 465 GXAPPPPPPXXXXXGGGG 518
           G  PPPPPP       GG
Sbjct: 772 GAGPPPPPPPPPAVSAGG 789



 Score = 23.8 bits (49), Expect(2) = 3.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 474 PPPPPPXXXXXGGG 515
           PPPPPP     G G
Sbjct: 761 PPPPPPPPGVAGAG 774



 Score = 21.4 bits (43), Expect(2) = 3.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +3

Query: 471 APPPPPP 491
           +PPPPPP
Sbjct: 731 SPPPPPP 737


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +3

Query: 408 PPPPXXXXFFFFFFXXXXGGXAPPPPPP 491
           PPPP              G  APPPPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/53 (30%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
 Frame = +1

Query: 352 PPPXXKKKGGXSP*XGGGX------PPPXXXXXFFFFFFXXXXGGXPPPPPPP 492
           PPP  ++  G  P   G        PPP               G   PPPPPP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 463 GGXPPPPPPP 492
           G  PPPPPPP
Sbjct: 7   GNPPPPPPPP 16


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,734
Number of Sequences: 5004
Number of extensions: 33950
Number of successful extensions: 191
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)