Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_H12
         (1019 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   0.80 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.80 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.80 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.80 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   5.6  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   5.6  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
            Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 943  PPPPPPPPXXXXFFFFXXXPPP 1008
            PPPPPPPP    F+     P P
Sbjct: 306  PPPPPPPPPSNDFWKDSNEPAP 327



 Score = 29.5 bits (63), Expect = 0.80
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +1

Query: 940 PPPPPPPPP 966
           PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 946  PPPPPPPXXXXFFFFXXXPPPP 1011
            PPPPPPP     F+     P P
Sbjct: 306  PPPPPPPPPSNDFWKDSNEPAP 327


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +1

Query: 940 PPPPPPPPP 966
           PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 940 PPPPPPPPP 966
           P PPPPPPP
Sbjct: 236 PAPPPPPPP 244


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +1

Query: 940 PPPPPPPPP 966
           PPPPPPPPP
Sbjct: 775 PPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 940  PPPPPPPPPXXXXFFFFXXXPPPP 1011
            PPPPPPPP            PPPP
Sbjct: 761  PPPPPPPPGVAGA----GPPPPPP 780


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +1

Query: 940 PPPPPPPPP 966
           PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 940  PPPPPPPPPXXXXFFFFXXXPPPP 1011
            PP  PPPPP    F      PPPP
Sbjct: 5    PPGNPPPPPPPPGFEPPSQPPPPP 28



 Score = 23.8 bits (49), Expect(2) = 4.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 941 PPPPPPP 961
           PPPPPPP
Sbjct: 24  PPPPPPP 30



 Score = 21.0 bits (42), Expect(2) = 4.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 848 PPPPPP 865
           PPPPPP
Sbjct: 10  PPPPPP 15


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 941  PPPPPPPP 964
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102



 Score = 26.6 bits (56), Expect = 5.6
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 943  PPPPPPPP 966
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 941 PPPPPPPP 964
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377



 Score = 26.6 bits (56), Expect = 5.6
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 943 PPPPPPPP 966
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,949
Number of Sequences: 5004
Number of extensions: 46213
Number of successful extensions: 509
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 531251476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)