Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_H11
         (974 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    32   0.54 
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   5.0  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    28   8.8  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 17/55 (30%), Positives = 17/55 (30%)
 Frame = +2

Query: 731 PXHPXNPXNXXPPAXXARXXPDXXSXHHXSGXPSPXPXRPXLXXSQXXVPPPPRL 895
           P  P  P    PP       P           PSP P  P         PPPPRL
Sbjct: 144 PRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPPRL 198


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/50 (28%), Positives = 15/50 (30%)
 Frame = +2

Query: 740 PXNPXNXXPPAXXARXXPDXXSXHHXSGXPSPXPXRPXLXXSQXXVPPPP 889
           P  P    PP       P      +  G P P P R          PPPP
Sbjct: 319 PPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 368


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/50 (28%), Positives = 15/50 (30%)
 Frame = +2

Query: 740 PXNPXNXXPPAXXARXXPDXXSXHHXSGXPSPXPXRPXLXXSQXXVPPPP 889
           P  P    PP       P      +  G P P P R          PPPP
Sbjct: 329 PPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 378


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/53 (30%), Positives = 19/53 (35%)
 Frame = +2

Query: 731  PXHPXNPXNXXPPAXXARXXPDXXSXHHXSGXPSPXPXRPXLXXSQXXVPPPP 889
            P  P  P +   P       P   S    +G P P P  P L      +PPPP
Sbjct: 1342 PPPPPPPSDDLTPVPPPPPPPPTMSKA-PTGVPLPVPPPPPLFSPSMILPPPP 1393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.135    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,037,418
Number of Sequences: 27780
Number of extensions: 111858
Number of successful extensions: 258
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2531861596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)