Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_H10
         (923 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    29   6.2  
AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    25   7.1  
AF003139-6|AAB54156.1|  327|Caenorhabditis elegans Collagen prot...    28   8.2  

>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +1

Query: 706 PXXPPP--GPPXPKXXXXXGGEEXRPPP 783
           P  PPP  GPP P+     G +  +PPP
Sbjct: 717 PAPPPPGVGPPPPQGIPPMGFDPNKPPP 744


>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 25.4 bits (53), Expect(2) = 7.1
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 718 PPGPPXPKXXXXXGGEEXRPPP 783
           PPGPP P      GG     PP
Sbjct: 256 PPGPPGPPGQDGSGGAAQPGPP 277



 Score = 21.4 bits (43), Expect(2) = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 706 PXXPPPGPPXP 738
           P   PPGPP P
Sbjct: 211 PPPGPPGPPGP 221


>AF003139-6|AAB54156.1|  327|Caenorhabditis elegans Collagen protein
           45 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 718 PPGPPXPKXXXXXGGEEXRP 777
           PPGPP P+     GGE+  P
Sbjct: 266 PPGPPGPRGKDGAGGEKGAP 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,521,491
Number of Sequences: 27780
Number of extensions: 125501
Number of successful extensions: 633
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)