Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_H09
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    29   1.2  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    27   2.8  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    27   3.7  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    27   4.9  

>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 24/75 (32%), Positives = 34/75 (45%)
 Frame = +3

Query: 516 IFN*KSLQLPSECAKMSLSVSKNSKNENTEIEDSREGSESPAPPPDGGWGWMVVFASFMI 695
           IF+   L + S+      SVS N+  EN    + +     P PPP    GW V F S  I
Sbjct: 431 IFSRDPLVIFSDSILQDNSVS-NAHFENLNSTNWQSMRFKP-PPPGSDIGWRVEFRSMEI 488

Query: 696 HIVTDGMTYSFGVFI 740
            I TD    ++ +F+
Sbjct: 489 QI-TDFENAAYSIFV 502


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 673 TIHPHPPSGGGAGLSEPSLES-SISVFSFLEFFETLRDILAHSEG 542
           ++H +P +  G    + +L   + ++FSF   F +LR IL  SEG
Sbjct: 199 SLHRYPVNESGDSQYQGALVGFAFNLFSFKNKFSSLRSILFRSEG 243


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = -3

Query: 638 GTFRAFSRIFYLSVFILGIL*NAQRHFGTLRRQL**FLIKYSLFSKCVIIFVI 480
           G   AF  +F+L  F + I  NA +H  + +RQ+  +L KY LF + +  +++
Sbjct: 19  GILLAFILMFWLERFRVIIKSNAHKHDPSDKRQI--WLEKYYLFVRQIYTYLV 69


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/58 (18%), Positives = 27/58 (46%)
 Frame = +3

Query: 513 AIFN*KSLQLPSECAKMSLSVSKNSKNENTEIEDSREGSESPAPPPDGGWGWMVVFAS 686
           ++F  K+  LP +      + +++  N N  + +    +++    P   W W++ FA+
Sbjct: 37  SVFENKTQVLPVDSVSRLSNGARSRSNSNISLSEPHALNDTVEDQPVSKWVWVLAFAA 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,855
Number of Sequences: 5004
Number of extensions: 59917
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)