Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_H06
         (893 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    24   7.2  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    23   9.5  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    23   9.5  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +1

Query: 796 PQNPXGVFPPGEGAPPQKGVFXHXPXDP-PPXP 891
           P  P  + PPG   PP+ G     P  P PP P
Sbjct: 186 PPGPQMMRPPGNVGPPRTGT----PTQPQPPRP 214


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.4 bits (48), Expect = 9.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 460 GGPGILARXXEXGPKXQPLFPGGWG 386
           G PG+  R  E G   +P  PG  G
Sbjct: 544 GAPGLPGRDGEKGEPGRPGLPGAKG 568


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 23.4 bits (48), Expect = 9.5
 Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = +1

Query: 790 ASPQNPX-GVFPPGEGAPPQKGVFXHXPXDPP 882
           A P  P   + PP    PP+ G+    P  PP
Sbjct: 69  AGPPKPNISIPPPTMNMPPRPGMIPGMPGAPP 100


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 503,237
Number of Sequences: 2352
Number of extensions: 7027
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 96334083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)