Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_H05
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.062
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    26   7.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   9.4  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   9.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.062
 Identities = 17/49 (34%), Positives = 17/49 (34%)
 Frame = -3

Query: 724 PPPPXGXXKXPXXKKXFFXPPPXPXXGXPPPXFXPPLFVXXKHPXFFPP 578
           PPPP               PPP P  G PPP   PP       P   PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 31.9 bits (69), Expect = 0.11
 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = -1

Query: 726 SPPPPXXXKKXP-PEKKXFXXPPPXXXGGXPPPXFXPP 616
           SPPPP      P P       PPP    G PPP   PP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 29.5 bits (63), Expect = 0.57
 Identities = 15/48 (31%), Positives = 17/48 (35%)
 Frame = -1

Query: 720 PPPXXXKKXPPEKKXFXXPPPXXXGGXPPPXFXPPXLXXXNTXXFFPP 577
           PPP      PP       PPP   G  PPP   PP         ++ P
Sbjct: 752 PPPAPIMGGPPPPP----PPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/48 (27%), Positives = 15/48 (31%)
 Frame = -1

Query: 720 PPPXXXKKXPPEKKXFXXPPPXXXGGXPPPXFXPPXLXXXNTXXFFPP 577
           PPP   +           P P       PP   PP +    T   FPP
Sbjct: 79  PPPYTAEPEARYNSTIHNPMPPMSQAYRPPPTEPPTVPAYETSSEFPP 126


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = -1

Query: 726  SPPPPXXXKKXPPEKKXFXXPPPXXXGGXPPPXFXPP 616
            S PP       PP+      PPP      PPP   PP
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMS--VPPPPSAPP 1722


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 665 PPPPXXGGXPPPXXXPP 615
           PPPP   G  PP   PP
Sbjct: 10  PPPPPPPGFEPPSQPPP 26


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/55 (30%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
 Frame = -3

Query: 724 PPP--PXGXXKXPXXKKXF-FXPPPXPXXGXPPPXFXPPLFVXXKHPXFFPPXXG 569
           PPP  P    K P          PP P    PPP    P+      P  F P  G
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAG 226


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 401 TPPXFSPGXGALXPPXRGGXPQKPXXF 481
           T P  SP    + PP +GG P  P  F
Sbjct: 99  TIPSNSPAVSNMQPPTQGGQPLYPTNF 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,092
Number of Sequences: 5004
Number of extensions: 38331
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)