Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_H04
         (926 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...   164   2e-41
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    27   2.8  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    27   2.8  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    26   6.6  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    26   6.6  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   8.7  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   8.7  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score =  164 bits (398), Expect = 2e-41
 Identities = 89/240 (37%), Positives = 132/240 (55%), Gaps = 5/240 (2%)
 Frame = +3

Query: 111 REHYPALKQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGD 290
           R HY  L ++Y+       K   AD++SVL M  S T     K E LKY L G  ++   
Sbjct: 101 RPHYFTLVKIYDSWPQSPQKTQLADILSVLGMSYSNT----SKHESLKYRLQGVTTDPSL 156

Query: 291 WGHEYVRQLEGEIAEEWNIEN-----MDSLLPLVRDVITFDMKHSAEIQACDLLMEIDRL 455
           WGHEYVR L  EI EE+          D L+ L   ++ F + H+AE  A DLL E+  +
Sbjct: 157 WGHEYVRHLASEIEEEFASRQEEEAPTDDLMELALTIVPFFLTHNAEADAIDLLQELGAI 216

Query: 456 DLLTQHMDQSNYPRVCLYLIGCASYVVEPESTQILQGVLDTYLRFGEYPRAMLVAMQLHE 635
           + +   ++  N  RVCLY+  C + +  PE   +L+     Y +F +  +A+ VA++L +
Sbjct: 217 EKVVPFVELDNASRVCLYITSCVNLLPFPEDVAMLRTAHAIYRKFDQLTQALNVAIRLDD 276

Query: 636 KAKCEEVFNACNDPLIKKQLCYLLARQYIPLEVDDEDLRTILLNAHINDHFLSLARELIL 815
            +  +E   A  DPL+KKQ+ Y+LARQ IP+++ DE+L   L N H++DHF  L +EL L
Sbjct: 277 MSLIKEDCEAATDPLLKKQMSYMLARQQIPMDMGDEELNDALNNTHLSDHFHYLGKELNL 336


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 296 SPITYI*QCSQKTILQTLSLFCNFQSTAYAHR 201
           SP+TY+   S ++ILQTL        T Y +R
Sbjct: 325 SPVTYMISVSARSILQTLLAVAFLGETLYGNR 356


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 636 KAKCEEVFNACNDPLIKKQLCYLLARQYIPLEVDDEDLRTILL 764
           KA  + +  AC   L + ++C+LL R  +  + +  D +T+L+
Sbjct: 296 KADIDYLNEACGLSLPEDEICHLLTRMMLTAKPNPNDSKTLLV 338


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 322 PSNCLTYSCPQSPTFDNVPRRQYFKHSLFSATSRVPLTP 206
           P+N    +  +SPT   VP  +Y  +S+  A    PL P
Sbjct: 450 PNNYEVSTIMRSPTISTVPPPKYLSNSINGAKFLNPLAP 488


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
 Frame = +3

Query: 114 EHYPAL-KQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGD 290
           E+Y  L +QVY+K T  KTKK    + S L + +  TLE+      L       L ++ D
Sbjct: 304 ENYRNLVRQVYDKDTYFKTKKDDLTLSSELLV-IPATLELISSMTSL-------LQSLAD 355

Query: 291 WGHEYVRQLEGEIAEEWNIENMDSLLPLVRD 383
            G + + + E  + E+ ++  MD +  +V +
Sbjct: 356 -GTDELEEQEDSLMEDEDLSYMDDMSNVVNE 385


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
 Frame = +3

Query: 114  EHYPALKQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDW 293
            E  PAL  ++  I +EK K F +  I + A   S  +E A+ R+ +   LL  ++   D 
Sbjct: 1836 EFIPALLDMHVHIPEEKKKSFLSMSIPI-AAHFSILVEHADARKRIGEKLLKIMAIQPDE 1894

Query: 294  GHEYVRQL---EGEIAEEWNIENMD 359
                ++QL   + +  EE  I+N++
Sbjct: 1895 AKAIIQQLSPRQKKCVEEILIQNVE 1919


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 511 LLDVQVMLLSLSQHKYYKVS*IHTFVLESTQEQCL*LCNFMRKLN 645
           LL +   L+ L ++ + + S I+  ++  T+E C  + N   KLN
Sbjct: 196 LLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLN 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,306,076
Number of Sequences: 5004
Number of extensions: 67315
Number of successful extensions: 211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)