Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_H04
(926 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 189 3e-48
Z82082-11|CAH10808.1| 721|Caenorhabditis elegans Hypothetical p... 36 0.054
Z82082-9|CAB04966.2| 586|Caenorhabditis elegans Hypothetical pr... 36 0.054
AL132902-16|CAB82004.2| 721|Caenorhabditis elegans Hypothetical... 36 0.054
U21317-6|AAA62527.1| 313|Caenorhabditis elegans Hypothetical pr... 32 0.51
Z99171-2|CAB16314.1| 710|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical pr... 28 8.2
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 189 bits (460), Expect = 3e-48
Identities = 94/242 (38%), Positives = 148/242 (61%), Gaps = 9/242 (3%)
Frame = +3
Query: 111 REHYPALKQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGD 290
R HY +K+++ I KK CAD+ISVLAM E+ + + Y +LG+ +GD
Sbjct: 88 RPHYNKMKEIFTSIVAPDVKKLCADIISVLAMTSD------ERTDTINYRILGSHEPIGD 141
Query: 291 WGHEYVRQLEGEIAEEWNIENMDS-----LLPLVRDVITFDMKHSAEIQACDLLMEIDRL 455
WGHEYVR L E++EEW E LL L +D+++ MKH+AE++ACDLL+EI+R+
Sbjct: 142 WGHEYVRHLAMEMSEEWKKEGTSDARKAELLKLTQDIVSHHMKHNAEVEACDLLIEIERI 201
Query: 456 DLLTQHMDQSNYPRVCLYLIGCASYVVEPESTQILQGVLDTYLRFGEYPRAMLVAMQLHE 635
DLL ++ + ++ RVCLYL+ CA +P++ +++ L YL+F Y A+ A+ +++
Sbjct: 202 DLLISYVQEVDHQRVCLYLLSCAPLTPDPDNIILIRTALQLYLKFNRYLEAVRCAIMVND 261
Query: 636 KAKCEEVFNACNDPLIKKQLCYLLARQYIPLE----VDDEDLRTILLNAHINDHFLSLAR 803
+ ++F +DPL++KQ+ LL R I L+ D + L + NAH+ ++F SLAR
Sbjct: 262 IPQVHQIFAKASDPLLRKQMAILLGRHQIFLDYEGSADSDALAELNSNAHLYEYFHSLAR 321
Query: 804 EL 809
EL
Sbjct: 322 EL 323
>Z82082-11|CAH10808.1| 721|Caenorhabditis elegans Hypothetical
protein Y71A12B.12a protein.
Length = 721
Score = 35.5 bits (78), Expect = 0.054
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 561 QGVLDTYLRFGEYPRAMLVAMQL-HEKAKCEEVFNACNDPLIKKQLCYLLARQYIPLEVD 737
Q +L T+ Y ++A++L H + E VF C D L+KKQ YLLA + I ++VD
Sbjct: 589 QVLLKTWTSDRAYLVLSILALRLNHSDSSTECVFKKCADELLKKQFPYLLATK-ISVDVD 647
>Z82082-9|CAB04966.2| 586|Caenorhabditis elegans Hypothetical
protein Y71A12B.12b protein.
Length = 586
Score = 35.5 bits (78), Expect = 0.054
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 561 QGVLDTYLRFGEYPRAMLVAMQL-HEKAKCEEVFNACNDPLIKKQLCYLLARQYIPLEVD 737
Q +L T+ Y ++A++L H + E VF C D L+KKQ YLLA + I ++VD
Sbjct: 454 QVLLKTWTSDRAYLVLSILALRLNHSDSSTECVFKKCADELLKKQFPYLLATK-ISVDVD 512
>AL132902-16|CAB82004.2| 721|Caenorhabditis elegans Hypothetical
protein Y71A12B.12a protein.
Length = 721
Score = 35.5 bits (78), Expect = 0.054
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 561 QGVLDTYLRFGEYPRAMLVAMQL-HEKAKCEEVFNACNDPLIKKQLCYLLARQYIPLEVD 737
Q +L T+ Y ++A++L H + E VF C D L+KKQ YLLA + I ++VD
Sbjct: 589 QVLLKTWTSDRAYLVLSILALRLNHSDSSTECVFKKCADELLKKQFPYLLATK-ISVDVD 647
>U21317-6|AAA62527.1| 313|Caenorhabditis elegans Hypothetical
protein B0495.8a protein.
Length = 313
Score = 32.3 bits (70), Expect = 0.51
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +3
Query: 117 HYPALKQVYEKITDEKTKKFCADVISVLAMGVS-GTLEVAEKRECLKYCLLGTLSNVGDW 293
H PA K YE+ EK + D ++ V +E+A+ RE L+ + S D
Sbjct: 62 HEPAHKADYERAQKEKDHFYDVDAFEIIEHAVHLVDIEIAKVREKLEDDVKTQTSQAADS 121
Query: 294 GHEYVRQLEGEIAEEWNIENMDSL 365
+ V ++E +IA+ N+++++ L
Sbjct: 122 KAKQVAEIEEKIAK--NVDDIEKL 143
>Z99171-2|CAB16314.1| 710|Caenorhabditis elegans Hypothetical
protein F47G4.2 protein.
Length = 710
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 597 YPRAMLVAMQL-HEKAKCEEVFNACNDPLIKKQLCYLLARQYIPLEVD 737
Y + A++L H+ E VF C D L++K YLLA + I ++VD
Sbjct: 590 YLMLSIFALRLNHQDKNFECVFRKCADELLRKHFPYLLATE-ITVDVD 636
>Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical
protein T21B10.3 protein.
Length = 1170
Score = 28.3 bits (60), Expect = 8.2
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +3
Query: 555 ILQGVLDTYLRFGEYPRAMLVAMQLHEKAKCEEVFNACNDPLIKKQLCYLLARQYIPLEV 734
+L G++D E A L+ Q ++ + V DP +K Q+C LL I L
Sbjct: 19 VLNGLVDE-----EATAAALIRYQFQQRTIKDVVRRGSEDPELKAQICDLLNHLVIYLNE 73
Query: 735 DDEDLRTILLNAHIND-HFLSLARELILWNEIXI 833
+ + + ++D HF+ L + + L E+ +
Sbjct: 74 EIVETSSKACPDGMDDRHFVQLEKRMHLMFEVYL 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,171,783
Number of Sequences: 27780
Number of extensions: 376279
Number of successful extensions: 1057
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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