Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_H03
         (910 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    32   0.65 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    32   0.65 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    32   0.65 
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    30   2.6  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    30   2.6  
AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical...    29   3.5  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    29   4.6  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 24/86 (27%), Positives = 25/86 (29%)
 Frame = +2

Query: 473 PPLXXXXXPPXFFXKXFXXFXPPKXFFFXGXXPFFFXPPXXPPXKKXXGXPPFLXXXKXP 652
           PP+     PP           PP      G  P    PP  PP     G PP       P
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPP--GGLPPITGGPPPPPPP---GGLPPISGGPPPP 761

Query: 653 PPPFXXXXPXKXXXXXXXFXXKTPPP 730
           PPP     P         F    PPP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPP 787


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 24/86 (27%), Positives = 25/86 (29%)
 Frame = +2

Query: 473 PPLXXXXXPPXFFXKXFXXFXPPKXFFFXGXXPFFFXPPXXPPXKKXXGXPPFLXXXKXP 652
           PP+     PP           PP      G  P    PP  PP     G PP       P
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPP--GGLPPITGGPPPPPPP---GGLPPISGGPPPP 761

Query: 653 PPPFXXXXPXKXXXXXXXFXXKTPPP 730
           PPP     P         F    PPP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPP 787


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 24/86 (27%), Positives = 25/86 (29%)
 Frame = +2

Query: 473 PPLXXXXXPPXFFXKXFXXFXPPKXFFFXGXXPFFFXPPXXPPXKKXXGXPPFLXXXKXP 652
           PP+     PP           PP      G  P    PP  PP     G PP       P
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPP--GGLPPITGGPPPPPPP---GGLPPISGGPPPP 344

Query: 653 PPPFXXXXPXKXXXXXXXFXXKTPPP 730
           PPP     P         F    PPP
Sbjct: 345 PPPPGGCPPPPPPPPPGGFKGGPPPP 370


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = +2

Query: 497 PPXFFXKXFXX-FXPPKXFFFXGXXPFFFXPPXXPPXKKXXGXPPFLXXXKXPPPP 661
           PP F  +     F PP   F  G  P  F PP  P   +    PPF      PPPP
Sbjct: 308 PPHFMGRGMPPPFMPPPPHFGMGP-PRGFMPPPHPMMFRGGPYPPFF----PPPPP 358


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = +2

Query: 497 PPXFFXKXFXX-FXPPKXFFFXGXXPFFFXPPXXPPXKKXXGXPPFLXXXKXPPPP 661
           PP F  +     F PP   F  G  P  F PP  P   +    PPF      PPPP
Sbjct: 308 PPHFMGRGMPPPFMPPPPHFGMGP-PRGFMPPPHPMMFRGGPYPPFF----PPPPP 358


>AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical
           protein K07H8.10 protein.
          Length = 798

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 22/74 (29%), Positives = 25/74 (33%), Gaps = 7/74 (9%)
 Frame = -2

Query: 660 GGGGFFXXXKXGGXPXXFFXG-------GXXGGXKKXGXXPXKKXXXGGXKXXXXXKKKX 502
           GGGG F     G  P  F  G       G  GG +       +    GG           
Sbjct: 28  GGGGGFRGGDRGRSPGGFRGGDRGRSSSGFRGGDRGRSPGGFRGDREGGFSPRGRGGGFR 87

Query: 501 GGXXXXFKGGKRGG 460
           GG    F+GG RGG
Sbjct: 88  GGDRGGFRGGDRGG 101


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/72 (27%), Positives = 21/72 (29%), Gaps = 2/72 (2%)
 Frame = +2

Query: 584 PPXXPPXKKXXGXPP--FLXXXKXPPPPFXXXXPXKXXXXXXXFXXKTPPPKFXAXXVFG 757
           PP  PP       PP         PPPP     P +          K PPP F      G
Sbjct: 695 PPGVPPMFNLNAPPPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPPPMFQQGFNAG 754

Query: 758 XRGPLFXXKKNP 793
              P F     P
Sbjct: 755 APPPPFGRGAGP 766


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,073,974
Number of Sequences: 27780
Number of extensions: 168128
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)