Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_G24
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    27   2.2  
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    27   2.9  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    27   3.8  

>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 131 HHGRSINVVTRSPAVPSWW*PRCNGGXAKSP 223
           H G  I VV+R+     WW  R NG   + P
Sbjct: 429 HAGDRIEVVSRTDNQNEWWIGRLNGAQGQFP 459


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 136 RAFHKCRHEKPSSAVMVVTPL 198
           RA HKC  EKP+S      PL
Sbjct: 27  RAIHKCEFEKPTSVQSETIPL 47


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -2

Query: 372 GKKIXFWTPKFPGLGFXFXCXXXPGY 295
           GK I FW  K  GLG  F C     Y
Sbjct: 380 GKPIPFWLWKLHGLGKEFPCEICGNY 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,916
Number of Sequences: 5004
Number of extensions: 27784
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)