Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_G23
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    36   0.011
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    27   2.8  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   4.9  
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    27   4.9  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    27   4.9  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    26   6.5  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    26   8.5  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   8.5  

>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 35.5 bits (78), Expect = 0.011
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = +1

Query: 616 NFNHLLNFMYPTRGNIERSERRXPLLQRRQFHRLSFRQDH-----DLYLRAYCQFVVKED 780
           N NHLLNF +  R N        P  + R ++       H       Y+ A  +FVV   
Sbjct: 124 NLNHLLNFQFTPRTNSNAFSA--PPRRSRGYNTYGQGSGHHPMDKSRYVNANYRFVVSPI 181

Query: 781 YDYKINSLDPDVPI 822
            DY+   LDPD P+
Sbjct: 182 GDYQSQKLDPDSPV 195


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 894  WXPQXIGHSDFPVFLQQFFQFHPIYWHIR 808
            W P+    +  PV  + ++QF+  YW IR
Sbjct: 1260 WSPRWFSAAKHPVTGEDYWQFNNEYWKIR 1288


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 283 LMLEESRMDKKLNRS-TQPQSRASAVDCKKNSDLTHKPWPRNNKKRE 420
           L + ES M   + R  TQP + A+ V  +K S+ + KP  +   K E
Sbjct: 469 LSVHESEMPPHVTRDYTQPAASATPVPKEKPSEKSEKPPKKKGSKLE 515


>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +1

Query: 358 DCKKNSDL--THKPWPRNNKKREGPGG 432
           D K+++DL  T    P+ NKKR+GP G
Sbjct: 194 DTKESTDLAGTEDSAPKANKKRKGPKG 220


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 688 LLQRRQFHRLSFRQDHDLYLRAYCQFVVKE 777
           ++  R     S+R D+D Y   Y  FVVK+
Sbjct: 444 IITPRSITEFSYRYDNDDYANIYTSFVVKD 473


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -2

Query: 286 STKTKRDTPRGGNDITYKADILESHVYDYKIKKIQLPVLYN 164
           S +  +D P   N++  + D+ ++   +YK+ K  +P LY+
Sbjct: 2   SEEVVQDAPLENNELNAEIDLQKTIQEEYKLWKQNVPFLYD 42


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = +1

Query: 751 AYCQFVVKEDYDYKINSLDPDVPIN 825
           A   + + E+YD++ ++++PD+PI+
Sbjct: 293 AEIDYPLLEEYDFRNDNINPDLPID 317


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 59  KVFS*IIVVHDERECTTPFF*FGKFLIVYLPA 154
           K F  ++V   E +    FF F +F++VY+PA
Sbjct: 442 KYFDQVVVGLKEVKDAFSFFIFNRFVLVYVPA 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,580,638
Number of Sequences: 5004
Number of extensions: 75559
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)