Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_G22
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo...    28   1.6  
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    26   6.3  

>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
           Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 656 FNPCSHHQYGYTIHHRFSYSYVSI 585
           FN C  ++  Y  HH + + YV++
Sbjct: 108 FNQCIENRINYAKHHNYGFEYVNV 131


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 413 FIARYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEIIKKMAERQ 547
           F+A   H  PQ++ E F  + +++  + + R  +K+ +KK A  Q
Sbjct: 410 FVANLYH--PQREQETFKMYKNDDDTKKRKRKKKKKEVKKKARIQ 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,537,712
Number of Sequences: 5004
Number of extensions: 76014
Number of successful extensions: 203
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)