Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_G21
(900 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.39
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.52
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 0.90
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.8
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.8
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 4.8
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 4.8
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb... 26 8.4
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.39
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 686 PPPPPPPPXXXFFXXXPPXXPXXKKKK 766
PPPPPPPP PP P KK
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKK 35
Score = 29.1 bits (62), Expect = 0.90
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 686 PPPPPPPPXXXFFXXXPPXXPXXKKKK 766
PPPPPPP PP P KK+
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPGYVKKR 36
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.52
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 686 PPPPPPPPXXXFFXXXPPXXP 748
PPPPPPPP PP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 687 PPPPPPPP 710
PPPPPPPP
Sbjct: 775 PPPPPPPP 782
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 687 PPPPPPPP 710
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 686 PPPPPPPPXXXFFXXXPPXXP 748
PPPPPPP PP P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 29.1 bits (62), Expect = 0.90
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 687 PPPPPPPPXXXFFXXXPXXXPXXKK 761
PPPPPPPP F+ P K
Sbjct: 307 PPPPPPPPSNDFWKDSNEPAPADNK 331
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 686 PPPPPPPP 709
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 841 GGGXXXXXXPPPPPPPXXN 897
G G PPPPPPP N
Sbjct: 328 GNGSSNSSLPPPPPPPRSN 346
Score = 23.8 bits (49), Expect(2) = 2.9
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 686 PPPPPPP 706
PPPPPPP
Sbjct: 337 PPPPPPP 343
Score = 22.2 bits (45), Expect(2) = 8.0
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 860 GXXXPPPPPP 889
G PPPPPP
Sbjct: 357 GRSAPPPPPP 366
Score = 21.8 bits (44), Expect(2) = 8.0
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +2
Query: 692 PPPPPPXXXFFXXXPP 739
PPPPPP PP
Sbjct: 311 PPPPPPPSRRNRGKPP 326
Score = 21.8 bits (44), Expect(2) = 2.9
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = +2
Query: 689 PPPPPPPXXXFFXXXPP 739
PPPPPP PP
Sbjct: 361 PPPPPPRSAPSTGRQPP 377
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 687 PPPPPPPP 710
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 686 PPPPPPPP 709
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 686 PPPPPPPP 709
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 687 PPPPPPPP 710
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 686 PPPPPPPP 709
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 687 PPPPPPPP 710
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 477
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 24 PLLRGNSFKNLIFFTGYLFACKXXWAKIRL 113
PL+R + K L+ G L AC +I L
Sbjct: 28 PLIRKRTMKKLLLIVGLLLACSTVMRRIPL 57
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,719,235
Number of Sequences: 5004
Number of extensions: 19226
Number of successful extensions: 323
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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