Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_G19
(910 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 32 0.72
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 1.7
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 2.9
12_02_0299 - 17051570-17052474,17053542-17053755 29 3.9
08_01_0059 - 394001-394708 29 6.7
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.9
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 28 8.9
07_01_0479 + 3606663-3607448 28 8.9
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.9 bits (69), Expect = 0.72
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +2
Query: 602 PPPPPXXXXXXKXXXPPXXXXXGXXXPPPXGG 697
PPPPP PP G PPP GG
Sbjct: 354 PPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGG 385
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/62 (32%), Positives = 20/62 (32%)
Frame = +1
Query: 502 PXKKPX*PKXPXKRAXKPXKKXPXXWXXFSXXGPPPPPXXXXXXKKXXPPPXFXXGXGXX 681
P K P P P K P GP PPP KK PPP G
Sbjct: 331 PPKAAPPPPPPKGPPPPPPAKGPPPPPP--PKGPSPPPPPPPGGKKGGPPPPPPKGGASR 388
Query: 682 PP 687
PP
Sbjct: 389 PP 390
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/54 (27%), Positives = 15/54 (27%)
Frame = +2
Query: 602 PPPPPXXXXXXKXXXPPXXXXXGXXXPPPXGGXXXXXXXXXXXXPPPXXXXXXP 763
PPPPP PP PPP G PPP P
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPP 366
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 590 PXXXPPPPPXXXXXXKXXXPPXXXXXGXXXPPPXGG 697
P PPPPP PP G PPP G
Sbjct: 349 PAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKG 384
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = +1
Query: 601 PPPPPXXXXXXKKXXPPPXFXXGXGXXPPXXGXFXXXXXPXXFXPPPP 744
PPPPP + P P G G PP P PPPP
Sbjct: 1122 PPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPP---APPPP 1166
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 605 PPPPXXXXXXKXXXPPXXXXXGXXXPPPXGG 697
PPPP PP G PPP GG
Sbjct: 1099 PPPPSIGAGAPPPPPPPGGITGVPPPPPIGG 1129
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.9 bits (64), Expect = 2.9
Identities = 25/96 (26%), Positives = 28/96 (29%)
Frame = +1
Query: 478 IPXIRGDNPXKKPX*PKXPXKRAXKPXKKXPXXWXXFSXXGPPPPPXXXXXXKKXXPPPX 657
+P +P P P R+ P P S PPPPP PPP
Sbjct: 594 LPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPLPNHSVLPPPPPP---------PPPPS 644
Query: 658 FXXGXGXXPPXXGXFXXXXXPXXFXPPPPXXXXXXP 765
PP G P PPPP P
Sbjct: 645 LPNRLVPPPPAPGIGNKFPAPPP-PPPPPRSSSRTP 679
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/74 (28%), Positives = 22/74 (29%)
Frame = +1
Query: 523 PKXPXKRAXKPXKKXPXXWXXFSXXGPPPPPXXXXXXKKXXPPPXFXXGXGXXPPXXGXF 702
P P A P P FS PPPPP PP PP +
Sbjct: 263 PLPPWPWAPPPAFPFPHLPPIFSPPSPPPPPPPAFPFPFPQLPP-----LPHFPPLPSFY 317
Query: 703 XXXXXPXXFXPPPP 744
P PPPP
Sbjct: 318 PSPPPPPPPPPPPP 331
>08_01_0059 - 394001-394708
Length = 235
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/55 (29%), Positives = 17/55 (30%)
Frame = +1
Query: 601 PPPPPXXXXXXKKXXPPPXFXXGXGXXPPXXGXFXXXXXPXXFXPPPPXXXXXXP 765
PPPPP PPP PP P + PPPP P
Sbjct: 3 PPPPPRRAPPPPATPPPPPRRAPPPPSPPIRP--PPPPTPRPYAPPPPSHPLAPP 55
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/54 (25%), Positives = 16/54 (29%)
Frame = +1
Query: 604 PPPPXXXXXXKKXXPPPXFXXGXGXXPPXXGXFXXXXXPXXFXPPPPXXXXXXP 765
PPPP + PPP PP + PPPP P
Sbjct: 11 PPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPLAPPPPHISPPAP 64
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 340 NESAN---ARGEAVCVLGALPLPRSLTRCAR 423
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +1
Query: 601 PPPPPXXXXXXKKXXPPPXFXXGXGXXPPXXGXFXXXXXPXXFXPPP 741
PPPPP PPP G PP P PPP
Sbjct: 1169 PPPPPPLSPSLPPPPPPPPLPSG---PPPQPAPPPLPIQPPPIPPPP 1212
>07_01_0479 + 3606663-3607448
Length = 261
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/58 (31%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Frame = +1
Query: 598 GPPPPPXXXXXXKKXXPPPXFXXGXGXXPPXXGXFXXXXXPXXFXP--PPPXXXXXXP 765
GPPPPP PP G PP P F P PPP P
Sbjct: 200 GPPPPPGPFMRGPPPMGPPQVRPGMPGGPPP--GMRPGMPPPPFRPGMPPPPPGPQQP 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,099,634
Number of Sequences: 37544
Number of extensions: 395073
Number of successful extensions: 1560
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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