Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_G16
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    73   4e-14
SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa...    58   2e-09
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac...    42   2e-04
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    38   0.002
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    28   1.6  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    28   2.1  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    27   3.7  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   6.4  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    26   8.5  

>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 73.3 bits (172), Expect = 4e-14
 Identities = 36/137 (26%), Positives = 68/137 (49%)
 Frame = +2

Query: 200 VSNAYSYTVTVDAHAEECFYENVEADTKLGLSFEIAEGGFLDIDVIILGPDGNVIHKAER 379
           +S  + + +T+  H  ECFYEN+  + ++ ++++   GG   + + I  P G ++H+   
Sbjct: 16  ISVVFGHGITLKPHQRECFYENLRNNDQMSVTYQTNVGGDQLVSMSIYNPAGQIMHQEVP 75

Query: 380 ESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENEADHNKLEDMI 559
            S   Y+F+    GKY YCF N       K V+FN+          +E+   +N L   +
Sbjct: 76  NSMAQYSFTVKNPGKYMYCFYNDALDGESKEVLFNV---HGVIYISDEDLDANNPLLGKV 132

Query: 560 KELATTLRTIKHDPRVY 610
           ++L  T+  +KH+   +
Sbjct: 133 RQLHDTISKVKHEQEYF 149



 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 23/49 (46%), Positives = 33/49 (67%)
 Frame = +3

Query: 600 QEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYLKRFLK 746
           QEY   R+RIHR+  ESTN RV  WSI +  +L+ + + Q++YLKR  +
Sbjct: 146 QEYFVARERIHRNTAESTNDRVKWWSILQTVILVSVCVFQIFYLKRLFE 194


>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 30/143 (20%), Positives = 64/143 (44%), Gaps = 5/143 (3%)
 Frame = +2

Query: 176 LVVTLLNLVSNAYSYTVTVDAHAEECFY-ENVEADTKLGLSFEIAEGGFLDIDVIILGPD 352
           + + LL  +++A   T  ++   ++C+Y ++     K   ++ +  GG  D+D +I  P 
Sbjct: 9   ITLFLLASLASAIELTFKLENQEKQCYYLDSFHTGEKTHFTYAVQSGGSFDVDYMIKAPS 68

Query: 353 GNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNL----EIGEPQTKSGN 520
              +   ++       F+    G+Y +CF N MS+ T K+V   +    E+  P      
Sbjct: 69  QKTVALGKKRRQADVFFTLEEKGEYEFCFDNHMSTFTDKIVTMEITMENELSLPALTRDE 128

Query: 521 ENEADHNKLEDMIKELATTLRTI 589
             +   + ++  + E++T L  I
Sbjct: 129 AKDYKKDSMQSTVLEISTALSEI 151



 Score = 33.9 bits (74), Expect = 0.032
 Identities = 15/52 (28%), Positives = 32/52 (61%)
 Frame = +3

Query: 597 IQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYLKRFLKCS 752
           +Q Y + R+  + S  +ST +R+  +S+ E+ +++ ++  QV+ +K F K S
Sbjct: 154 VQNYFKTREHRNYSTVKSTQARIFWFSLAESIMVVALSALQVFIVKTFFKRS 205


>SPBC16E9.09c |||COPII vesicle coat component
           Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 21/47 (44%), Positives = 29/47 (61%)
 Frame = +3

Query: 600 QEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYLKRF 740
           Q   + R+   R  +ES NSRVV W+I +  VLLV  I Q+ +L+RF
Sbjct: 162 QMLQRSREMTFRDTSESANSRVVRWTIVQIVVLLVTCIWQLSHLQRF 208


>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +3

Query: 606 YMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYLKRFLK 746
           Y+Q R+   R+ NESTN RV  ++      L V+ I Q+ YL+ F +
Sbjct: 164 YLQAREARFRNTNESTNERVKNFAYLTFISLFVLVIWQILYLRSFFQ 210


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 348 LMVTSFIKQRGSHLVFIHFLLQLQGSILIASVIKCHP 458
           +MVT  +K  G   + +HF+  + G+ L  ++ KC P
Sbjct: 170 VMVTEALKPYGQENLELHFVSNIDGTHLAEALKKCDP 206


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 788 CNVNKSINITQHAALQKPLEIVDLSDSHDKQ 696
           C + KS+N+ QH  LQ     + L D ++K+
Sbjct: 765 CEMEKSLNVLQHKVLQLQAVNMKLHDYYEKE 795


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 533 DHNKLEDMIKELATTLRTIKHDP 601
           DH+KL+D +++ A+TL  IK  P
Sbjct: 723 DHSKLDDDLEKFASTLDPIKTTP 745


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 213  YALLTRFNKVTTSHCDILKYFILLNV 136
            YA+L   N +T++ CD   Y +L+ V
Sbjct: 1026 YAILNILNLLTSNECDEFDYSVLMKV 1051


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 833 LSXLXTIXXTSHTNMCNVNKSINITQHAALQKPLEIVDLSD 711
           L  L ++  T+   + NVN  I   + A + KPL++V L++
Sbjct: 225 LPILTSMAETASGQLLNVNADITAGELARVLKPLKVVYLNE 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,425,527
Number of Sequences: 5004
Number of extensions: 70881
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)