Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_G15
         (908 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0534 - 4635122-4635380,4635716-4635837                           29   5.1  
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434...    29   6.7  
04_04_0592 + 26477974-26479311                                         28   8.9  
02_05_0314 + 27818077-27818809,27818839-27818906,27819345-278195...    28   8.9  

>08_01_0534 - 4635122-4635380,4635716-4635837
          Length = 126

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 119 AGVAWARCDGRRRPATSLGLWTG 187
           +GV W  C GR    +++G WTG
Sbjct: 71  SGVKWKSCGGRTGSRSAVGRWTG 93


>02_05_0197 - 26641356-26642188,26642312-26642398,26643373-26643452,
            26643948-26644120,26644227-26644308,26644623-26644758,
            26644777-26644833,26644905-26645120,26645939-26646335,
            26646458-26646544,26647063-26647324,26648892-26648972,
            26649176-26650350
          Length = 1221

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 17/34 (50%), Positives = 17/34 (50%)
 Frame = -1

Query: 188  GQSRGRATSLDAAGRRTGPTRPQPHVGAXALHAG 87
            G SRG A  L AAGR    T  QPHV      AG
Sbjct: 1062 GSSRGGAVGLSAAGRML-ETPGQPHVAPNGWPAG 1094


>04_04_0592 + 26477974-26479311
          Length = 445

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 132 HATPATCWGGRVARGXPWHSPAALPEXKXLRNASXXXXVWKY 7
           + TPA  W G V RG    SP ++P  + L N      ++KY
Sbjct: 228 NGTPAEAWLGAVQRGDV--SPGSIPLGQNLSNLLRLALLYKY 267


>02_05_0314 +
           27818077-27818809,27818839-27818906,27819345-27819528,
           27819700-27819800,27820479-27820586,27820728-27820946
          Length = 470

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +1

Query: 94  CNAXAPTCGWGRVGPVRRPAASSDVARPLDWPRLLT*LASTTRDQTNAHIHNGGLYFEL 270
           C   + + G+  V   RR  +S   A+P D+   +  ++ST   +  A  H+G  + ++
Sbjct: 82  CYHHSRSLGFSSVSSSRRMYSSDARAKPEDYKNAMAKVSSTETSEVGATDHSGNTWIDI 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,309,030
Number of Sequences: 37544
Number of extensions: 388827
Number of successful extensions: 1167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)