Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_G14
         (972 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.32 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.43 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.99 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   5.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 545 PPPXGGXGXSXXXXPPPPPPP 607
           PPP    G +    PPPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 545 PPPXGGXGXSXXXXPPPPPP 604
           PPP  G   +    PPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 545 PPPXGGXGXSXXXXPPPPPPP 607
           PPP G  G      PPPPPPP
Sbjct: 765 PPPPGVAGAGPP--PPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.43
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 545 PPPXGGXGXSXXXXPPPPPPP 607
           PPP    G      PPPPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.99
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +2

Query: 548 PPXGGXGXSXXXXPPPPPPP 607
           PP G  G S    PPPPPPP
Sbjct: 325 PPIGN-GSSNSSLPPPPPPP 343



 Score = 23.8 bits (49), Expect(2) = 5.2
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 545 PPPXGGXGXSXXXXPPPPP 601
           PP   G   S    PPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPP 343



 Score = 21.0 bits (42), Expect(2) = 5.2
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 587 PPPPPP 604
           PPPPPP
Sbjct: 361 PPPPPP 366


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 551 PXGGXGXSXXXXPPPPPPP 607
           P  G   +    PPPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPPPP 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,363,750
Number of Sequences: 5004
Number of extensions: 15870
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)