Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_G11
(905 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 30 0.39
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 30 0.52
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.6
SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces pom... 28 1.6
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 28 2.1
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3... 27 2.8
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 2.8
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 27 4.8
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 26 6.4
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 26 8.5
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 30.3 bits (65), Expect = 0.39
Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 2/190 (1%)
Frame = +1
Query: 205 PAPRGLCFDRNDFVKTNFSVDNFLAEHQDVASLETMRDDLGMYLKVLRLAMIELINKDYA 384
P P F D V T VD + +S + RDD + +R IEL+ + +
Sbjct: 1089 PRPSTKPFSTQDEVLTKLPVDQASLKAAWESSQKLTRDD---WQDWIRRISIELLKESPS 1145
Query: 385 NFVNLCATLIGFDKAIAKVHVPLEQLNKDVLNVK-QSLEDAMKETSMWMSQRHNLQSKKQ 561
+ + C+TL G ++ PL +D+ NV S D + E++ KK
Sbjct: 1146 SALRSCSTLAG-------IYHPLA---RDLFNVSFLSCWDELTESN-----------KKN 1184
Query: 562 LLKYYSQTINSLNTLDNVLQNITEQKMYDKIVLADRAA-MQYNQLKFTIKKCDNLVKLEH 738
L+K +N+ N +LQ + Y + D + + KC+ K H
Sbjct: 1185 LVKSIELAMNAPNISVEILQTLLNLAEY--MEREDHTLPIPIKVISAHASKCNVYAKALH 1242
Query: 739 KTQFTYIEET 768
T+ +++ET
Sbjct: 1243 YTELQFVQET 1252
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 29.9 bits (64), Expect = 0.52
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 9/129 (6%)
Frame = +1
Query: 283 HQDVASLETMRDDLGMYLKVLRLAMIELINKDYANFV-----NLCATLIGFDKAIAKVHV 447
H + SL+ + DL LKVL ++EL ++A + LC I +K K+
Sbjct: 275 HTKLNSLQLIEGDLNACLKVLEECLVELDKLEHATVLLSTNQELC-DQIEINK--KKLEF 331
Query: 448 PLEQLNKDVLNVKQSLEDAMKETSMWM-SQRHNLQSKKQLLKYYSQTINSL---NTLDNV 615
EQL K + N ++ LE + + + + + + ++ K +Q N N
Sbjct: 332 RKEQLLKQLSNAQEKLEHEQHSRNQKLEAAKQRMDNIREEYKVITQERNKKIQETEKKNA 391
Query: 616 LQNITEQKM 642
+ +TEQK+
Sbjct: 392 MIEMTEQKI 400
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Frame = +1
Query: 484 KQSLEDAMKETSMWMSQR------HNLQSKKQLLKYYSQTINSLNTLDNVLQNITEQKMY 645
K+++EDA +E + R H + + +L +YY + + +NV++ I ++
Sbjct: 48 KKAIEDARQEVLQQIQHRKFRQYLHEREQEARLQEYYLEQLQERRAFENVVRTIIRKRFE 107
Query: 646 DK 651
D+
Sbjct: 108 DE 109
>SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 190
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 266 STEKFVFTKSFRSKHKPRGAGGKLNSVDSHSMF 168
S+ K +FTK + H G GG NSV F
Sbjct: 16 SSGKRIFTKYYAPPHLKEGEGGVFNSVKEEKTF 48
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 27.9 bits (59), Expect = 2.1
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Frame = +1
Query: 355 MIELINKDYANFVNLCATLIGFDKAIAKVHVPLEQLNKDVLNVK--QSLEDAMKETSMWM 528
+I + + ++++ + L G KAIAK +VPL L+ + +VK +SLE +++
Sbjct: 593 LISSLTPKFFDWLDEKSCLNGIMKAIAKFYVPL-PLSYEESDVKSIRSLESCLEDYLFPE 651
Query: 529 SQRHNLQSKKQLLKYYSQTINSLNTLDNVLQ 621
+R + KK + I SL L NV +
Sbjct: 652 FRRRVICPKKVFEEKCIYQITSLPRLYNVFE 682
>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 466
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +1
Query: 733 EHKTQFTYIEETLV--RTLNELLFQFWNDXD 819
+HKTQF Y++++LV + + +F W + D
Sbjct: 269 DHKTQFFYVDQSLVFWSCMMDQMFLLWLESD 299
>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 320
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 379 YANFVNLCATLIGFDKAIAKVHVP 450
Y +FV CA L F I K H P
Sbjct: 172 YGSFVKACAPLFRFASGIIKAHAP 195
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 472 VLNVKQSLEDAMKETSMWMSQRHNLQSKKQLLK 570
+L SLE+++ E W S R +++ + LLK
Sbjct: 986 LLEAPTSLENSLVEDDKWASLRQKIKAARDLLK 1018
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 26.2 bits (55), Expect = 6.4
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 8/133 (6%)
Frame = +1
Query: 349 LAMIELINKDYANFVNLCATLIG--------FDKAIAKVHVPLEQLNKDVLNVKQSLEDA 504
LA +E NK N +NL + F I + + + LN ++ N + + D
Sbjct: 745 LAALESKNKKLENDLNLLTEKLNKKNADTESFKNTIREAELSKKALNDNLGNKENIISDL 804
Query: 505 MKETSMWMSQRHNLQSKKQLLKYYSQTINSLNTLDNVLQNITEQKMYDKIVLADRAAMQY 684
+ S ++ LQS+ +Q N + TL+ + ++ + + ++A
Sbjct: 805 KNKLSEESTRLQELQSQ------LNQDKNQIETLNERISAAADELSSMESINKNQA---- 854
Query: 685 NQLKFTIKKCDNL 723
N+LK +KC NL
Sbjct: 855 NELKLAKQKCSNL 867
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 8.5
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Frame = +1
Query: 475 LNVKQSLEDAMKETSMWMSQRHNLQSKKQLLKYYSQTINSLNTLDNVLQNITEQKMYDKI 654
LNVK S +E ++S + N + KK++ Q +NS L++V +K+ +++
Sbjct: 493 LNVKSS-----REQLQYVS-KSNQEHKKEVEALQLQLVNSSTELESVKSE--NEKLKNEL 544
Query: 655 VLADRAAMQY--NQLKFTIKKCD-NLVKLEHKTQFTYIEETLVRT---LNELLFQFWN 810
VL +Y N+ K T D + E K + E L RT E FWN
Sbjct: 545 VLEIEKRKKYETNEAKITTVATDLSQYYRESKEYIASLYEKLDRTERNNKENENNFWN 602
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,316,744
Number of Sequences: 5004
Number of extensions: 65786
Number of successful extensions: 195
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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