Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_G11
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.7  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 550 SKKQLLKYYSQTINSLN-TLDNVLQNITEQKMYDKIVLADRAAMQYNQLKFTIKKCDNLV 726
           S  +  KY+ QT+N LN  L+ V + +T    Y   ++     M  N +K  +  C +L+
Sbjct: 41  SNNKSKKYFEQTLNELNFNLNYVNKGVT----YKHTII----EMDSNPIKTALSVCKSLI 92

Query: 727 K 729
           +
Sbjct: 93  E 93



 Score = 21.8 bits (44), Expect = 8.8
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = -1

Query: 473 TSLFNCSNGTCTLAIALSKPINVAHKLTKLA*SLFINSIIAN 348
           T  F C      L   LSK IN  + L       F N II N
Sbjct: 454 TKTFCCKGYCMDLLKELSKTINFTYSLALSPDGQFGNYIIKN 495


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 16/65 (24%), Positives = 27/65 (41%)
 Frame = +1

Query: 451 LEQLNKDVLNVKQSLEDAMKETSMWMSQRHNLQSKKQLLKYYSQTINSLNTLDNVLQNIT 630
           L  LN D+ NVK +L+       +  +   N+   K  +  Y     S+N     ++N  
Sbjct: 391 LRALN-DLYNVKNTLDSYNGSMEINQNIAQNIDHAKNTIIDYRNNDLSINEEKRTIENEQ 449

Query: 631 EQKMY 645
             +MY
Sbjct: 450 LNRMY 454


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 139 HHN*GKCLIISCLDDLDEMLN*YHDLSLTSKSKS*GFP 26
           HH+  K      +D   E L   HD+SLT  S + G P
Sbjct: 404 HHHGSKSWTQEDMDAALEALR-NHDMSLTKASATFGIP 440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,159
Number of Sequences: 438
Number of extensions: 4445
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)