Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_G10
(915 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 50 3e-07
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 49 8e-07
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 45 2e-05
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 44 2e-05
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 40 7e-04
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 40 7e-04
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 38 0.003
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 37 0.003
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 36 0.011
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 36 0.011
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 33 0.057
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 33 0.057
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 33 0.075
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 31 0.23
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 29 0.70
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 28 1.6
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 28 2.1
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ... 28 2.1
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 27 2.8
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 27 4.9
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 26 6.5
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 26 8.6
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch... 26 8.6
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 50.4 bits (115), Expect = 3e-07
Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 10/158 (6%)
Frame = +3
Query: 453 ILDGLNMTVAKGSIYGLLGASGCGKTTLLSCIVGRRRLNSGEIWVLXXXXXXXXXXXXXX 632
+L+G+ V G + L+G SG GKTTLL+ + +R+++G +
Sbjct: 900 LLNGVQGFVVPGKLTALMGESGAGKTTLLNVLA--QRVDTGVVTGDMLVNGRGLDSTFQR 957
Query: 633 RIGYMPQEVALFGEFSIRETLIYFGWI---ANMXTPQVEERIDFLIKLLQLPNPTRQVKN 803
R GY+ Q+ GE ++RE L + + A++ + E ++ +IKLL++ + +
Sbjct: 958 RTGYVQQQDVHIGESTVREALRFSAALRQPASVPLSEKYEYVESVIKLLEMESYAEAIIG 1017
Query: 804 YLG------DTKKDFFSRXPYHDPELLI-LDEPTVGVD 896
G K+ P LL+ LDEPT G+D
Sbjct: 1018 TPGSGLNVEQRKRATIGVELAAKPALLLFLDEPTSGLD 1055
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 49.2 bits (112), Expect = 8e-07
Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 9/190 (4%)
Frame = +3
Query: 354 FKTQKSTVASRRQQAVCVRRAHKRYGTAKNPNVILDGLNMTVAKGSIYGLLGASGCGKTT 533
+ T+ V S + A+ R+ Y T ++ V L GLN+TV G +G+SGCGK+T
Sbjct: 1104 WSTEGKKVESLQSAAIEFRQVEFSYPTRRHIKV-LRGLNLTVKPGQFVAFVGSSGCGKST 1162
Query: 534 LLSCIVGRRRLNSGEIWVLXXXXXXXXXXXXXXRIGYMPQEVALFGEFSIRETLIYFGWI 713
+ I ++G + V +I + QE L+ + ++RE ++ G
Sbjct: 1163 TIGLIERFYDCDNGAVLVDGVNVRDYNINDYRKQIALVSQEPTLY-QGTVRENIV-LGAS 1220
Query: 714 ANMXTPQVEE---RIDFLIKLLQLPNPTRQVKNYLGDT------KKDFFSRXPYHDPELL 866
++ ++ E + + +L LPN + G + ++ +R +P++L
Sbjct: 1221 KDVSEEEMIEACKKANIHEFILGLPNGYNTLCGQKGSSLSGGQKQRIAIARALIRNPKIL 1280
Query: 867 ILDEPTVGVD 896
+LDE T +D
Sbjct: 1281 LLDEATSALD 1290
Score = 36.3 bits (80), Expect = 0.006
Identities = 36/165 (21%), Positives = 71/165 (43%), Gaps = 16/165 (9%)
Frame = +3
Query: 450 VILDGLNMTVAKGSIYGLLGASGCGKTTLLSCIVGRRRLNSGEIWVLXXXXXXXXXXXXX 629
++LD ++ G I L+GASG GK+T++ + G++++
Sbjct: 436 LVLDNFSLVCPSGKITALVGASGSGKSTIIGLVERFYDPIGGQVFLDGKDLRTLNVASLR 495
Query: 630 XRIGYMPQEVALFGEFSIRETLIY---FGWIANMXTPQVEERI----------DFLIKLL 770
+I + QE LF ++ E + Y + ++E R+ DF++ L
Sbjct: 496 NQISLVQQEPVLFAT-TVFENITYGLPDTIKGTLSKEELERRVYDAAKLANAYDFIMTLP 554
Query: 771 QLPNPTRQVKNYL---GDTKKDFFSRXPYHDPELLILDEPTVGVD 896
+ + + +L G ++ +R DP++L+LDE T +D
Sbjct: 555 EQFSTNVGQRGFLMSGGQKQRIAIARAVISDPKILLLDEATSALD 599
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 44.8 bits (101), Expect = 2e-05
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 6/154 (3%)
Frame = +3
Query: 453 ILDGLNMTVAKGSIYGLLGASGCGKTTLLSCIVGRRRLNSGEIWVLXXXXXXXXXXXXXX 632
+L +N G + L+G SG GK+T++ ++ +NSG I +
Sbjct: 599 VLSDINFVAQPGKVIALVGESGGGKSTIMRILLRFFDVNSGSITIDDQDIRNVTLSSLRS 658
Query: 633 RIGYMPQEVALFGEFSIRETLIYFGWIANMXTPQVEERIDFLIKLLQLPN------PTRQ 794
IG +PQ+ LF + + N + ++LQ P+ R
Sbjct: 659 SIGVVPQDSTLFNDTILYNIKYAKPSATNEEIYAAAKAAQIHDRILQFPDGYNSRVGERG 718
Query: 795 VKNYLGDTKKDFFSRXPYHDPELLILDEPTVGVD 896
+K G+ ++ +R DP +++LDE T +D
Sbjct: 719 LKLSGGEKQRVAVARAILKDPSIILLDEATSALD 752
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 44.4 bits (100), Expect = 2e-05
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +3
Query: 441 NPN-VILDGLNMTVAKGSIYGLLGASGCGKTTLLSCIVGRRRLNSGEIWVLXXXXXXXXX 617
NPN IL+G + + G+ +GASGCGK+T+L + +SG+I +
Sbjct: 453 NPNRPILNGCSFNIPAGAKVAFVGASGCGKSTILRLLFRFYDTDSGKILIDNQRLDQITL 512
Query: 618 XXXXXRIGYMPQEVALFGE 674
IG +PQ+ LF +
Sbjct: 513 NSLRKAIGVVPQDTPLFND 531
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 39.5 bits (88), Expect = 7e-04
Identities = 40/147 (27%), Positives = 62/147 (42%)
Frame = +3
Query: 456 LDGLNMTVAKGSIYGLLGASGCGKTTLLSCIVGRRRLNSGEIWVLXXXXXXXXXXXXXXR 635
LD + + + KGS L+GA+G GK+TLL + G+ +G I V
Sbjct: 20 LDHVTLDLPKGSRTLLVGANGAGKSTLLKLLSGKSLAKAGHISV----GGKDPFRESSSA 75
Query: 636 IGYMPQEVALFGEFSIRETLIYFGWIANMXTPQVEERIDFLIKLLQLPNPTRQVKNYLGD 815
Y+ E I + IA++ + ER DFLI +L + R G+
Sbjct: 76 FVYLGTE--WVNNPVIHRDMSVARLIASVGGDKFAERRDFLISILDIDLRWRMHAVSDGE 133
Query: 816 TKKDFFSRXPYHDPELLILDEPTVGVD 896
++ E+L+LDE TV +D
Sbjct: 134 RRRVQLCMGLLRPFEVLLLDEVTVDLD 160
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 39.5 bits (88), Expect = 7e-04
Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 5/154 (3%)
Frame = +3
Query: 456 LDGLNMTVAKGSIYGLLGASGCGKTTLLSCIVGRRRLNSGEIWVLXXXXXXXXXXXXXXR 635
L +++ + G + ++G SG GK+T +S ++ G I++
Sbjct: 452 LINVSVFIPFGELVHIIGPSGSGKSTFISLLLRYFSPTYGNIYLDDFPLEEIDEHVLGST 511
Query: 636 IGYMPQEVALFGEFSIRETLIYFGWIANMXTPQVEERI----DFLIKLLQ-LPNPTRQVK 800
I + Q+ +F + +IRE +I A+ + R+ +F + Q P ++
Sbjct: 512 ITLVCQQPVIF-DMTIRENIIMRNENASESDFEEVCRLALVDEFALTFDQSYDTPCKEAS 570
Query: 801 NYLGDTKKDFFSRXPYHDPELLILDEPTVGVDPV 902
G ++ +R D E+LILDEPT +DP+
Sbjct: 571 LSGGQQQRIALARALLRDTEILILDEPTSALDPI 604
Score = 38.7 bits (86), Expect = 0.001
Identities = 40/166 (24%), Positives = 81/166 (48%), Gaps = 9/166 (5%)
Frame = +3
Query: 426 YGTAKNPNVILDGLNMTVAKGSIYGLLGASGCGKTTLLSCIVGRRRLNSGEIWVLXXXXX 605
Y ++ ++ L+ +++++ ++G SG GK+TL+ + R+ S +I++
Sbjct: 1108 YPDSERNHLALNNVSLSIEAREKVAIVGISGSGKSTLVELL--RKTYPSEDIYIDGYPLT 1165
Query: 606 XXXXXXXXXRIGYMPQEVALFGEFSIRETLIYFGWIANMXTPQVEERID--FLIKLLQ-L 776
++ + Q+ L G +I E+L+Y + V + +D ++ +++Q L
Sbjct: 1166 NIDTNWLLKKVAIVDQKPHLLGS-TILESLLYG---VDRDINSVMDALDKTYMTEVIQNL 1221
Query: 777 PN----PTRQV-KNYLG-DTKKDFFSRXPYHDPELLILDEPTVGVD 896
PN P + KN+ G ++ F+R +P LLILDE T +D
Sbjct: 1222 PNGLDTPLLEFSKNFSGGQIQRLAFARALLRNPRLLILDECTSALD 1267
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 37.5 bits (83), Expect = 0.003
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 453 ILDGLNMTVAKGSIYGLLGASGCGKTTLLSCIVG 554
+L +N T+ +G + L G++G GKTTLL+ +VG
Sbjct: 279 VLSDINWTIREGERWALTGSNGSGKTTLLAYVVG 312
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +3
Query: 405 VRRAHKRYGTAKNPNVILDGLNMTVAKGSIYGLLGASGCGKTTLLSCIVG 554
V+ A+ + A+ P + ++ +A+ + ++G +G G+TT L CI G
Sbjct: 5 VKFANTTFLDARFP--LFKNVSFELARKQNWAIIGNTGSGRTTFLRCIQG 52
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 774 LPNPTRQVKNYLGDTKKDFFSRXPYHDPELLILDEPTVGVD 896
LP+ + N G +++ + P+LL+LDEP G+D
Sbjct: 142 LPSSLINLSN--GQSRRAMLASKLVQRPQLLLLDEPYAGLD 180
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +3
Query: 453 ILDGLNMTVAKGSIYGLLGASGCGKTTLLSCIVGR 557
IL G ++T+A+G YGL G +G GK+TLL + R
Sbjct: 197 ILTGASLTLAQGRRYGLTGRNGIGKSTLLRALSRR 231
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 35.5 bits (78), Expect = 0.011
Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 10/186 (5%)
Frame = +3
Query: 369 STVASRRQQAVCVRRAHKRYGTAKNPNVILDGLNMTVAKGSIYGLLGASGCGKTTLLSCI 548
+T+++ +C R + T + IL ++ + K ++ LLG + GK+ LL I
Sbjct: 748 TTLSTNDNLVLCWRDLNFTVVTKTSKKQILTNVSGYLKKNTLTALLGENKSGKSVLLR-I 806
Query: 549 VGRRRLNSGEIWVLXXXXXXXXXXXXXXRIGYMPQEVALFGEFSIRETLIYFGWIANMXT 728
+ +R + +G + RIGY+ + E+++RETL +
Sbjct: 807 LSQRGI-AGSVEGEITLSGLKNPKNLRKRIGYVRKNPLFISEYTVRETLRLHAALRQSKQ 865
Query: 729 PQVEER---IDFLIKLLQLPNPTRQVKNYLGDTKKDFFSRXPYHDPEL-------LILDE 878
+ E+ ++++I L L + +G + R EL L+LDE
Sbjct: 866 RSLSEQYAYVEYVIDFLGLGEVADFIVGDMGKGLSLYHKRLLSIAVELSARPGSILLLDE 925
Query: 879 PTVGVD 896
P G+D
Sbjct: 926 PANGLD 931
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 35.5 bits (78), Expect = 0.011
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 426 YGTAKNPNVILDGLNMTVAKGSIYGLLGASGCGKTTLLSCI 548
+ A ++L N+ + +G YG++G +GCGK+TLL I
Sbjct: 450 FSLAYGGRLLLSHTNLHLYRGHRYGVVGHNGCGKSTLLRAI 490
Score = 30.7 bits (66), Expect = 0.30
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = +3
Query: 375 VASRRQQAVCVRRAHKRYGTAKNPNVILDGLNMTVAKGSIYGLLGASGCGKTTLLSCIVG 554
V S + + + A Y AK + LD + + ++ S +LG +G GK+TL+ ++G
Sbjct: 684 VRSNTRLILKMTNASYTYPNAKKKS--LDNVTVGLSLSSRVAILGPNGAGKSTLIKVLIG 741
Query: 555 RRRLNSGEIW 584
G+++
Sbjct: 742 EVIPQEGKVF 751
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 33.1 bits (72), Expect = 0.057
Identities = 20/79 (25%), Positives = 37/79 (46%)
Frame = +3
Query: 432 TAKNPNVILDGLNMTVAKGSIYGLLGASGCGKTTLLSCIVGRRRLNSGEIWVLXXXXXXX 611
+A P ++ D +N+ + ++G +G GK+TL ++ SGEI++
Sbjct: 1222 SAAGPTILKD-VNLHINPSEKVAVVGRTGSGKSTLGLTLLRFTHRISGEIYINGRETQSV 1280
Query: 612 XXXXXXXRIGYMPQEVALF 668
RI ++PQ+ LF
Sbjct: 1281 NLNALRQRISFIPQDPILF 1299
Score = 31.1 bits (67), Expect = 0.23
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 456 LDGLNMTVAKGSIYGLLGASGCGKTTLLSCIVGRRRLNSG 575
L LN+ + + ++G +G GK++L+S ++G LN G
Sbjct: 631 LRDLNIVFPRNKLSIVIGPTGSGKSSLISALLGELSLNKG 670
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 33.1 bits (72), Expect = 0.057
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 426 YGTAKNPNVILDGLNMTVAKGSIYGLLGASGCGKTTLLSCIV 551
+ A ++L+ + + +G YGL G +G GK+TL+ IV
Sbjct: 440 FSLAYGAKILLNRTRLRLKRGRRYGLCGPNGSGKSTLMRAIV 481
Score = 30.7 bits (66), Expect = 0.30
Identities = 17/70 (24%), Positives = 35/70 (50%)
Frame = +3
Query: 375 VASRRQQAVCVRRAHKRYGTAKNPNVILDGLNMTVAKGSIYGLLGASGCGKTTLLSCIVG 554
V ++++ + V+ +Y P L+ ++ V+ S ++G +G GK+TL+ + G
Sbjct: 665 VKTKQRAIIKVQHMSFQYPGTSKPQ--LNDISFQVSLSSRIAVIGPNGAGKSTLIKVLTG 722
Query: 555 RRRLNSGEIW 584
GEI+
Sbjct: 723 ELLPTVGEIY 732
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 834 SRXPYHDPELLILDEPTVGVDPV 902
+R + +P++L+LDEPT +D V
Sbjct: 560 TRAMFKNPDILLLDEPTNHLDVV 582
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 32.7 bits (71), Expect = 0.075
Identities = 22/86 (25%), Positives = 40/86 (46%)
Frame = +3
Query: 438 KNPNVILDGLNMTVAKGSIYGLLGASGCGKTTLLSCIVGRRRLNSGEIWVLXXXXXXXXX 617
+N ++L+ +++ + G++G +G GK+TL + SG+I +
Sbjct: 1235 ENLPLVLNDISVNIKPQEKIGIVGRTGAGKSTLTLALFRLIEPTSGDIQLDDINITSIGL 1294
Query: 618 XXXXXRIGYMPQEVALFGEFSIRETL 695
R+ +PQE F E +IRE L
Sbjct: 1295 HDLRSRLAIIPQENQAF-EGTIRENL 1319
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 31.1 bits (67), Expect = 0.23
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 426 YGTAKNPNVILDGLNMTVAKGSIYGLLGASGCGKTTLLSCIVGR 557
Y + + ++++ + + G YGLLG +G GK+T L + R
Sbjct: 81 YTLSFHGRLLIENATIELNHGQRYGLLGDNGSGKSTFLESVAAR 124
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 29.5 bits (63), Expect = 0.70
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 465 LNMTVAKGSIYGLLGASGCGKTTLLSCIVGRRRLNSGEIW 584
+N G + + G G GK++LL +G NSG ++
Sbjct: 600 INFVAKNGELTCIFGKVGAGKSSLLEACMGNMYKNSGSVF 639
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 493 IDPLATVIFRPSKITLGFLAVPYLLCARLTHT 398
+D + V P K LGF+ YL+ RLT T
Sbjct: 639 VDKIKFVCLDPDKTKLGFMTFQYLIMFRLTCT 670
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 453 ILDGLNMTVAKGSIYGLLGASGCGKTTLLSCIVGRRRLNSGEI 581
I LN + S L+G +G GKTTL+ I+ + + ++G +
Sbjct: 609 IFSKLNFGLDLKSRVALVGPNGAGKTTLIKLILEKVQPSTGSV 651
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 450 VILDGLNMTVAKGSIYGLLGASGCGKTTLLSCI 548
+++ + + G YGL+ +G GK+TLL I
Sbjct: 289 LLIKDSELNLINGRRYGLIAPNGSGKSTLLHAI 321
>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 486
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 440 FSCSISFVRSSDTHRLLPPRSNCGLLSFE-HSVSS 339
FS +SF SSD H+ + + NC LL HS S
Sbjct: 412 FSSPLSFFMSSDFHKYMAEQINCLLLELTGHSPDS 446
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = -1
Query: 264 WLLHCRKLAFCLVKYGYT----RSQSTLIHNTLLATMR--KKKHFGFRN 136
WL H +K+A CL YGY R+ + +T +++ K + GFRN
Sbjct: 502 WLDHIKKVAICL--YGYVLDPCRAMDPKVVSTSYVSLQILNKPYVGFRN 548
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 544 HDSSVVLPQPEAPKRPYIDPLATVIFRPSKITL 446
HDSSV + P AP++P P A + + S++ L
Sbjct: 225 HDSSVTIAYPSAPEQP---PRALITVKLSQLPL 254
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 26.2 bits (55), Expect = 6.5
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Frame = -1
Query: 264 WLLHCRKLAFCLVKYGYTRSQSTLI---HNTLLATMRKKKHFGF-----RNFPTEILICF 109
W + C KL ++ +T +T I N ++ M + FGF RN E++ F
Sbjct: 345 WTIICEKLVETILSVAFTEQSTTTIIKLKNQIVLLMHTMERFGFSVESLRNLCVELIDAF 404
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 704 RLDREHVHSTSRRTNRLPHQVIAVT*SYKTSQKLS 808
R D EH+HS ++ + L ++ SYK ++ L+
Sbjct: 47 RSDLEHIHSKPKKDSLLSWNILLKKGSYKENELLA 81
>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 249 DNEGATISMEDVRDIDRPITISTIEEE 329
DN G IS + RD+DR I S +E+E
Sbjct: 117 DNGGRRISQQGQRDLDR-IAYSLLEDE 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,719,572
Number of Sequences: 5004
Number of extensions: 75796
Number of successful extensions: 253
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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