Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_G08
         (930 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1512 + 27627740-27629009,27629111-27629256,27629842-276301...    30   2.3  
04_04_1165 + 31423674-31423881,31424073-31424200,31424996-314251...    30   2.3  
05_05_0009 + 21485254-21485426,21485512-21485734                       29   7.0  
02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842     29   7.0  
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851...    28   9.2  

>08_02_1512 +
           27627740-27629009,27629111-27629256,27629842-27630101,
           27630346-27630412,27630511-27630545,27630818-27631587,
           27631633-27631793
          Length = 902

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 122 HKQTVFRREIQSIEMLSAFCTCIWSQKS*GFPIGEW 15
           H   + R E+Q +E++S+F T + +QKS    + EW
Sbjct: 631 HMDLIKRLELQLLELISSFATWVNAQKSFVGTLNEW 666


>04_04_1165 +
           31423674-31423881,31424073-31424200,31424996-31425100,
           31425350-31425442,31425904-31425978,31426284-31426346,
           31426537-31426646,31426810-31426817,31426831-31426997
          Length = 318

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -1

Query: 510 ARPMA*ASAYDASRQQSMPSSQYASQRGRAVIGTLEIVIFGCSIVRGVVSW 358
           AR +  A+ YD  R+ ++PSS+  S  G    G + + +  C+I R  + W
Sbjct: 242 ARALRQATEYDLRRRGTVPSSKGHSVAGLENKGCMLLFLVDCNIQRKQMEW 292


>05_05_0009 + 21485254-21485426,21485512-21485734
          Length = 131

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 447 GWRAYSAVCWRRTRSPMPLVAPRTR 521
           GWRA + V W R R P  L  P+ R
Sbjct: 56  GWRAVAEVFWSRRRCPFGLRWPKRR 80


>02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842
          Length = 355

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -2

Query: 371 EWFPGTLQTPQGLGNAQIHCPHPXILFHLQFQPQPQIL*VVVSLFVTAHQVLLL 210
           E  PGT     G  +A   CP+  I       P P ++ +V  +    H++L+L
Sbjct: 22  EHCPGTQSEEAGKADACAGCPNQQICATAPKGPDPDLVGIVERMATVKHKILVL 75


>04_04_1690 -
           35382241-35382553,35382614-35382933,35383601-35385164,
           35385254-35385372,35385701-35385811,35386068-35386595,
           35386702-35386881,35386957-35387556,35387646-35388066,
           35388183-35388280,35388372-35389260,35389366-35389544,
           35389647-35389763,35389862-35389952,35390578-35390753
          Length = 1901

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 206 NHLRVYHLQHQTVQIQQNHHLPE*CLQNHKQTVFRREIQSIEML 75
           N +   H+  + VQI ++H L +  + +H Q +  RE  SI+ L
Sbjct: 519 NQVGEEHVVEEPVQISEDHELEDFVITDHGQLLQLREKYSIQCL 562


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,964,951
Number of Sequences: 37544
Number of extensions: 282536
Number of successful extensions: 719
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)