Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_G03
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.8  
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    26   8.5  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    26   8.5  

>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -1

Query: 548 LISCDYFWFSHSIYLYLYFWSFLSTFHWLGFLSNLCFQYHQLSTLF 411
           ++S   F  SH I  +  F+SFLS F  L F+   CF     S  F
Sbjct: 165 ILSHSLFHISHLISFHFLFFSFLS-FPLLSFILFPCFSLFLSSNSF 209


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 143 QIISDGNGEIKPEIVKLKSEVEQAK 217
           Q+IS  NGE+KP +V    ++E+AK
Sbjct: 280 QMIS--NGELKPRVVIFVQDIERAK 302


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 494 FWSFLSTFHWLGFLSNLCFQYHQLS 420
           F++FLS FH L F     FQ  QLS
Sbjct: 41  FFAFLSLFHLLEFYITARFQGSQLS 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,594
Number of Sequences: 5004
Number of extensions: 28134
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)