Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_G02
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.98 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   6.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 17/47 (36%), Positives = 17/47 (36%)
 Frame = +3

Query: 390 PPPLXXGGGXXXPPPXFFXXXXPPPXFFFFFFXXXXPPPPPXFXXGG 530
           PP    GG    PPP       PPP           PPPPP    GG
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPP----------PPPPPPAVSAGG 789


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 375 GEKKXPPPLXXGGGXXXPPPXF 440
           GE   PPP+    G   PPP F
Sbjct: 321 GEHMPPPPMHHEPGEHMPPPPF 342



 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/47 (31%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
 Frame = +3

Query: 375 GEKKXPPPLXXGGGXXXPPPXFF---XXXXPPPXFFFFFFXXXXPPP 506
           GE   PPP+    G   PPP          PPP           PPP
Sbjct: 204 GEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 250



 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/47 (31%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
 Frame = +3

Query: 375 GEKKXPPPLXXGGGXXXPPPXFF---XXXXPPPXFFFFFFXXXXPPP 506
           GE   PPP+    G   PPP          PPP           PPP
Sbjct: 243 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 289



 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/47 (31%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
 Frame = +3

Query: 375 GEKKXPPPLXXGGGXXXPPPXFF---XXXXPPPXFFFFFFXXXXPPP 506
           GE   PPP+    G   PPP          PPP           PPP
Sbjct: 282 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,499,413
Number of Sequences: 5004
Number of extensions: 21194
Number of successful extensions: 43
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)