Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_F24
         (912 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    26   0.36 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    26   0.36 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    26   0.36 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   0.62 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   7.6  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   7.6  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 317 SRGRKSTFQASPRSNLSLEDHRSNLDSDTNCPPTIPNVRN 198
           S G  S   +SP   L  ED RSN D+  +  P I    N
Sbjct: 145 SNGASSVGSSSPFDKLIEEDSRSNEDTSLHPSPRITKKAN 184


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 317 SRGRKSTFQASPRSNLSLEDHRSNLDSDTNCPPTIPNVRN 198
           S G  S   +SP   L  ED RSN D+  +  P I    N
Sbjct: 93  SNGASSVGSSSPFDKLIEEDSRSNEDTSLHPSPRITKKAN 132


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 317 SRGRKSTFQASPRSNLSLEDHRSNLDSDTNCPPTIPNVRN 198
           S G  S   +SP   L  ED RSN D+  +  P I    N
Sbjct: 276 SNGASSVGSSSPFDKLIEEDSRSNEDTSLHPSPRITKKAN 315


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 540 LNTISCSGVPLAYSHIFNRHNFT 472
           + T S S  PLAY H +N  N+T
Sbjct: 265 ITTPSPSASPLAYQHEYNSFNWT 287


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 315 SWKKIDFSGISTLELITGRS 256
           +WK +DF   +T EL+   S
Sbjct: 82  AWKHLDFRNSATAELLKNPS 101


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 315 SWKKIDFSGISTLELITGRS 256
           +WK +DF   +T EL+   S
Sbjct: 82  AWKHLDFRNSATAELLKNPS 101


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,996
Number of Sequences: 336
Number of extensions: 3964
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25444518
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)