Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_F24
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    32   0.13 
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    29   1.2  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    29   1.2  
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   2.1  
SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...    27   2.8  
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   4.9  

>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 620 GVYLDLDTVVAKALDPL--PKNWSAXXNDENVASGIMSFSRDH 742
           G+YLDLD    + LDPL     W    +   +++ +M F++ H
Sbjct: 136 GIYLDLDVGCNRTLDPLLHYPAWVRRTSPSGISNNVMGFAKGH 178


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 967

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 455  LRKFRNVKLWRLKIWEYAKGTPLQDMVFNGALNRTRWRISHASDYS 592
            +R  R ++L+ LKIW+ AKG  + +  +  +L+     +     YS
Sbjct: 911  VRGLRTLRLYFLKIWKEAKGMQIAERGYEDSLSNAYDELGGLMSYS 956


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 176 TDFAPDLYFLHWESLEDNSCH-YQDSNDDLPVISSSV 283
           TD  PD+Y+    S  D+ CH Y  ++DD P+  S V
Sbjct: 53  TDMHPDIYY-EKGSTVDHYCHSYDHNSDDTPLGKSKV 88


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 323 KRSRGRKSTFQASPRSNLSLEDHRSNLDSDT 231
           KR   +K+ F     SNLS  D  ++LD DT
Sbjct: 163 KRFETKKNNFSVKESSNLSNNDSDASLDEDT 193


>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -1

Query: 609 IQAQVTE*SDACDILQRVLFKAPLNTISCSGVPLAYSH 496
           I AQ+ E SDA D L      AP+  +S + VP+ YSH
Sbjct: 311 IAAQIME-SDAFDYLD-----APVERVSMADVPMPYSH 342


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -2

Query: 371 PLLRRRKPAVNPVRTCKRSRGRKSTFQASPRSNLSL-EDHRSNLDSDTNCPPTIPNVRNI 195
           P+L R  P +  +   K+S G  S     P ++ SL ED      +DT   P +    ++
Sbjct: 5   PILSRESPVLG-LEEEKKSDGGNSEVNIDPSASSSLKEDVDGEEGADTKIDPHLLEEDDL 63

Query: 194 NPARN 180
           NP  +
Sbjct: 64  NPVED 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,584,592
Number of Sequences: 5004
Number of extensions: 70878
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)