Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_F24
         (912 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   8.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   8.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 118 QLLCYIAIVPRLCDYSHFTYGFRAGFIFLTLGIVGG 225
           Q L + A  P   +  H    F   ++FL +GIVGG
Sbjct: 384 QTLMFSATFPD--EVQHLARRFLNNYLFLAVGIVGG 417


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 325 ARGLVEENRLFRHLHARTYH 266
           A GL+++  L RH H + +H
Sbjct: 129 ATGLIKQETLQRHHHLQNHH 148


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 191 DLYFLHWESLEDNSCHYQDSNDDLPV 268
           DL+FL    L +NS    +SN  LP+
Sbjct: 357 DLFFLQILDLRNNSIDRIESNAFLPL 382


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 497 ISSIATILRYEIFE 456
           +S + T LRYE+F+
Sbjct: 465 VSDVVTKLRYEVFQ 478


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 497 ISSIATILRYEIFE 456
           +S + T LRYE+F+
Sbjct: 433 VSDVVTKLRYEVFQ 446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,412
Number of Sequences: 438
Number of extensions: 4746
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)