Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_F23
(1147 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 38 0.003
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 37 0.005
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.014
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.024
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.17
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.30
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 30 0.52
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.92
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 29 0.92
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.9
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 4.9
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 37.5 bits (83), Expect = 0.003
Identities = 28/84 (33%), Positives = 30/84 (35%)
Frame = -2
Query: 936 GLXGVGXXGXGXXXVGXGXXXGGGLWGGGXXXGGXXGGGXGSXEVVXXGXWGFGXAXXAX 757
G G G G G G G G G +GG G GG G G GFG
Sbjct: 189 GFGGFGG-GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFG-GGPGG 246
Query: 756 XXGGVXGXXXXPRVXGXXXGGGGG 685
GG+ G P G GG GG
Sbjct: 247 FGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 30.7 bits (66), Expect = 0.40
Identities = 18/47 (38%), Positives = 19/47 (40%)
Frame = -1
Query: 826 GGXGFXRGGXGWXLGXWRGXVXXXXGWGGWGXXXPPGXGGXXGGWGG 686
GG G GG G G G G+GG G GG GG GG
Sbjct: 214 GGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGG 260
Score = 26.2 bits (55), Expect = 8.5
Identities = 23/85 (27%), Positives = 23/85 (27%), Gaps = 2/85 (2%)
Frame = -3
Query: 767 GXPSXGVGWXGXXRAPGSXGXLXGVGGGGXXXVFLGGL--XXSGAXXGLGGXXCGXGXXX 594
G G G G PG G G GG G GG G G GG G G
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFG 248
Query: 593 XXXXXXXXXXXXXXXGXXXGVGVGW 519
G G GW
Sbjct: 249 GGLGGFGGGPGGFGGGPGGHGGPGW 273
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 37.1 bits (82), Expect = 0.005
Identities = 49/214 (22%), Positives = 57/214 (26%), Gaps = 16/214 (7%)
Frame = +1
Query: 364 PXXTPNRXNXXPXPQTPXPPPXEXXDPKXXXPPPPPXXXXQRPXTXRGKTXAQPTPTPXX 543
P P+ P P T PP + PPP P + P + + A P P P
Sbjct: 1033 PIPVPSTAPPVPIP-TSTPPVPKSSSGAPSAPPPVPAPSSEIP-SIPAPSGAPPVPAPSG 1090
Query: 544 XPXXXXXXXXXXXXXXXXXX----PXPXXXPPKPXN---APEXXSP------PKNTXXXP 684
P P P PP P AP P PK + P
Sbjct: 1091 IPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAP 1150
Query: 685 PPPTPXXXPXDPGARXX-PXHPTPXXGXPRXAKXPA--PXXXHLXRTXPPPXXXXXXXXX 855
P P P P P P P P G P K A P P P
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPV 1210
Query: 856 XXXXXXXXXXXPHXXPPXAXXPHPXQPXXPHPAT 957
P P P P P P++
Sbjct: 1211 PPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSS 1244
Score = 34.7 bits (76), Expect = 0.024
Identities = 29/123 (23%), Positives = 34/123 (27%), Gaps = 1/123 (0%)
Frame = +1
Query: 403 PQTPXPPPXEXXDPKXXXPPPPPXXXXQRPXTXRGKTXAQPTPTPXXXPXXXXXXXXXXX 582
P P P P PP P P + + A P P P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPT-STPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Query: 583 XXXXXXXPXPXXXPPKPXNAPEXXSPPKNTXXXPPPPTPXXXPXDP-GARXXPXHPTPXX 759
P P PP P + PK + PP P P P P + P P P
Sbjct: 1081 GAPPV--PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
Query: 760 GXP 768
P
Sbjct: 1139 APP 1141
Score = 30.7 bits (66), Expect = 0.40
Identities = 28/111 (25%), Positives = 31/111 (27%)
Frame = +1
Query: 460 PPPPXXXXQRPXTXRGKTXAQPTPTPXXXPXXXXXXXXXXXXXXXXXXPXPXXXPPKPXN 639
PP P + P A P P P P P PP P
Sbjct: 1012 PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSG--APSAPPPVPAP 1069
Query: 640 APEXXSPPKNTXXXPPPPTPXXXPXDPGARXXPXHPTPXXGXPRXAKXPAP 792
+ E S P + PP P P P P P P P A P P
Sbjct: 1070 SSEIPSIPAPS-GAPPVPAPSGIPPVP----KPSVAAPPVPKPSVAVPPVP 1115
Score = 30.3 bits (65), Expect = 0.52
Identities = 20/97 (20%), Positives = 21/97 (21%)
Frame = +2
Query: 689 PPPPXXXPXTRGXXXXPXTPPXXXAHXAXPXPQXPXXTTSXEPXPPPXXXXXXXXXXXXX 868
P P P P P A P P PP
Sbjct: 1105 PKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
Query: 869 XXXXXPXPTXXXPXPXXPTPXNPXXPTPPXTXKSPXP 979
P P P P P P PP + P P
Sbjct: 1165 SVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201
Score = 28.7 bits (61), Expect = 1.6
Identities = 19/69 (27%), Positives = 23/69 (33%)
Frame = +1
Query: 622 PPKPXNAPEXXSPPKNTXXXPPPPTPXXXPXDPGARXXPXHPTPXXGXPRXAKXPAPXXX 801
PP P + + P + PP P P P P P P G P A P P
Sbjct: 1012 PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAP-SAPPPVPAPS 1070
Query: 802 HLXRTXPPP 828
+ P P
Sbjct: 1071 SEIPSIPAP 1079
Score = 27.1 bits (57), Expect = 4.9
Identities = 20/98 (20%), Positives = 21/98 (21%)
Frame = +2
Query: 689 PPPPXXXPXTRGXXXXPXTPPXXXAHXAXPXPQXPXXTTSXEPXPPPXXXXXXXXXXXXX 868
P P P P P A P P PP
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPK 1183
Query: 869 XXXXXPXPTXXXPXPXXPTPXNPXXPTPPXTXKSPXPT 982
P P P P P PP + P PT
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPT 1221
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = +3
Query: 375 PKPXXXPXPXPDPPAPPXXXXRPQTTXXP-PPPXXXXPTP 491
PKP P P PP+ +P P PPP P P
Sbjct: 1182 PKPAAGVPPVP-PPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 26.2 bits (55), Expect = 8.5
Identities = 18/95 (18%), Positives = 22/95 (23%)
Frame = +2
Query: 689 PPPPXXXPXTRGXXXXPXTPPXXXAHXAXPXPQXPXXTTSXEPXPPPXXXXXXXXXXXXX 868
P P P + P P P P PP
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Query: 869 XXXXXPXPTXXXPXPXXPTPXNPXXPTPPXTXKSP 973
P PT P P P P P + ++P
Sbjct: 1213 PSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.5 bits (78), Expect = 0.014
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = +2
Query: 686 PPPPPXXXPXTRGXXXXPXTPPXXXAHXAXPXPQXPXXTTSXEPXPPP 829
PPPPP T P PP P P P + P PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 34.3 bits (75), Expect = 0.032
Identities = 19/50 (38%), Positives = 19/50 (38%)
Frame = +1
Query: 604 PXPXXXPPKPXNAPEXXSPPKNTXXXPPPPTPXXXPXDPGARXXPXHPTP 753
P P P P AP PP PPPP P P GA P P P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP--PGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +3
Query: 375 PKPXXXPXPXPDPPAPPXXXXRPQTTXXPPPPXXXXP 485
P P P P P PP P PPP P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 404 PRPPXPPXXXXPTPNXXXPPPP 469
P PP PP P PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.7 bits (76), Expect = 0.024
Identities = 40/154 (25%), Positives = 44/154 (28%), Gaps = 11/154 (7%)
Frame = +1
Query: 364 PXXTPNRXNXXPXPQTPXPPPXEXXDPKXXXPPPP---PXXXXQRPXTXRGKTXAQPTPT 534
P P R N P PP P PPPP P Q P + + P
Sbjct: 338 PPPPPPRSNAAG--SIPLPPQGRSAPP----PPPPRSAPSTGRQPPPLSSSRAVSNPPAP 391
Query: 535 PXXXPXXXXXXXXXXXXXXXXXXPXPXXXPPKPXNAPEXXSP------PKNTXXXPP-PP 693
P P P P P +AP P P PP PP
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Query: 694 T-PXXXPXDPGARXXPXHPTPXXGXPRXAKXPAP 792
+ P P G P P P P A PAP
Sbjct: 452 SAPIAPPLPAGMPAAPPLP-PAAPAPPPAPAPAP 484
Score = 31.9 bits (69), Expect = 0.17
Identities = 28/106 (26%), Positives = 29/106 (27%), Gaps = 1/106 (0%)
Frame = +1
Query: 412 PXPPPXEXXDPKXXXPPPPPXXXXQRPXTXRGKTXAQ-PTPTPXXXPXXXXXXXXXXXXX 588
P PPP P P PP R T T P P P
Sbjct: 389 PAPPPAI---PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPA 445
Query: 589 XXXXXPXPXXXPPKPXNAPEXXSPPKNTXXXPPPPTPXXXPXDPGA 726
P PP P P +PP PPP P P P A
Sbjct: 446 APPLPPSAPIAPPLPAGMPA--APPLPPAAPAPPPAPAPAPAAPVA 489
Score = 31.5 bits (68), Expect = 0.23
Identities = 32/163 (19%), Positives = 42/163 (25%), Gaps = 8/163 (4%)
Frame = +1
Query: 364 PXXTPNRXNXXPXPQTPXPP-PXEXXDPKXXXPPPPPXXXXQRPXTXRGKTXAQPTPTPX 540
P P+ P +P P +P PP + + P P
Sbjct: 255 PIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPP 314
Query: 541 XXPXXXXXXXXXXXXXXXXXXPXPXXXPPKPXNAPEXXSPPKNTXXXPPPPTPXXXPXD- 717
P P PP+ A PP+ PPPP P P
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP-PRSAPSTG 373
Query: 718 ------PGARXXPXHPTPXXGXPRXAKXPAPXXXHLXRTXPPP 828
+R P P P + P + RT PP
Sbjct: 374 RQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPP 416
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = +2
Query: 686 PPPPPXXXPXTRGXXXXPXTPPXXXAHXAXPXPQXP-XXTTSXEPXPPP 829
P PPP P P +PP A P P +TS P PPP
Sbjct: 251 PAPPPIPPPSNGTVSSPPNSPPRPIA----PVSMNPAINSTSKPPLPPP 295
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +3
Query: 381 PXXXPXPXPDPPAPPXXXXRPQTTXXPPPPXXXXPTP 491
P P P P APP P PP P P
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.9 bits (69), Expect = 0.17
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 397 PXPQTPXPPPXEXXDPKXXXPPPPPXXXXQRPXTXRGKTXAQ 522
P P PPP +P PPPPP ++ + KT AQ
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKK---RKNKTPAQ 43
Score = 29.5 bits (63), Expect = 0.92
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = +3
Query: 393 PXPXPDPPAPPXXXXRPQTTXXPPPPXXXXPTPXXXKRKDQXPA 524
P P PP PP P PPPP KRK++ PA
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG------YVKKRKNKTPA 42
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.30
Identities = 18/54 (33%), Positives = 22/54 (40%)
Frame = +1
Query: 631 PXNAPEXXSPPKNTXXXPPPPTPXXXPXDPGARXXPXHPTPXXGXPRXAKXPAP 792
P P+ +PP+ + PPPP P P P A P P P P AP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPP-PMSVPPPPSAPPMPAGP-PSAPPPPLPASSAP 1741
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/38 (31%), Positives = 15/38 (39%)
Frame = +3
Query: 375 PKPXXXPXPXPDPPAPPXXXXRPQTTXXPPPPXXXXPT 488
P P P P PP+ P P + PP P P+
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 604 PXPXXXPPKPXNAPEXXSPPKNTXXXPPPPTP 699
P P PP P P PP PPPP P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPS----APPPPLP 1736
Score = 27.5 bits (58), Expect = 3.7
Identities = 16/53 (30%), Positives = 20/53 (37%)
Frame = +1
Query: 610 PXXXPPKPXNAPEXXSPPKNTXXXPPPPTPXXXPXDPGARXXPXHPTPXXGXP 768
P P +AP PP + PPPP+ P P + P P P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSV---PPPPSAPPMPAGPPSAPPP--PLPASSAP 1741
Score = 27.1 bits (57), Expect = 4.9
Identities = 11/32 (34%), Positives = 11/32 (34%)
Frame = +1
Query: 604 PXPXXXPPKPXNAPEXXSPPKNTXXXPPPPTP 699
P P PP P P PP P P P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/46 (30%), Positives = 16/46 (34%)
Frame = +2
Query: 686 PPPPPXXXPXTRGXXXXPXTPPXXXAHXAXPXPQXPXXTTSXEPXP 823
PPPPP P P PP + P P P + P P
Sbjct: 1707 PPPPPMSVPPP------PSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/47 (27%), Positives = 14/47 (29%)
Frame = +1
Query: 397 PXPQTPXPPPXEXXDPKXXXPPPPPXXXXQRPXTXRGKTXAQPTPTP 537
P P PPP P PP P P + A P P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 404 PRPPXPPXXXXPTPNXXXPPPPPXXXPNA 490
P PP PP P P+ PP P P+A
Sbjct: 1705 PTPPPPPMSVPPPPSA---PPMPAGPPSA 1730
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 30.3 bits (65), Expect = 0.52
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = -1
Query: 826 GGXGFXRGGXGWXLGXWRGXVXXXXGWGGWGXXXPPGXGGXXGGWGG 686
GG G RGG G G + G G G G GG GG+ G
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRG 184
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.92
Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Frame = +1
Query: 604 PXPXXXPPKPXNAPEXXSPPKNTXXXPPPPTPXXXPXDPGARXXPXHP-TPXXGXPRXAK 780
P P P +AP S P + PP P P P + P P P P
Sbjct: 131 PTPQSELRPPTSAPPRPSIPPPS-PASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189
Query: 781 XPAPXXXHLXRTXPPP 828
P+ + PPP
Sbjct: 190 LPSAVPPMPPKVPPPP 205
Score = 28.3 bits (60), Expect = 2.1
Identities = 20/79 (25%), Positives = 23/79 (29%), Gaps = 1/79 (1%)
Frame = +1
Query: 457 PPPPPXXXXQRPXTXRGKTXAQPTPTPXXXPXXXXXXXXXXXXXXXXXXP-XPXXXPPKP 633
P PP RP T + P P+P P P P PP
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187
Query: 634 XNAPEXXSPPKNTXXXPPP 690
+ P PP PPP
Sbjct: 188 PSLPSAV-PPMPPKVPPPP 205
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 29.5 bits (63), Expect = 0.92
Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Frame = +1
Query: 604 PXPXXXPPKPXNAPEXXSPPKNTXXXPPPPTPXXXPXDPGARXXPXHPTPXXGXPRXAKX 783
P P P P +APE + ++ PPP P P + P P +
Sbjct: 458 PRPFTNNPNPISAPEKPTSGESLSLNPPPAMPKVFPERDISSASQKAAQPSVITPSVPQP 517
Query: 784 P-APXXXHLXRTXPPP 828
P AP PP
Sbjct: 518 PAAPVVPEAPSVHQPP 533
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 4.9
Identities = 11/37 (29%), Positives = 15/37 (40%)
Frame = +2
Query: 374 PQTXXTAXPXPRPPXPPXXXXPTPNXXXPPPPPXXXP 484
P + + P +PP P+ PPPPP P
Sbjct: 161 PNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 4.9
Identities = 22/62 (35%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Frame = -2
Query: 912 GXGXXXVGXGXXXGG-GLWGGGXXXGGXXGGGXGSXEVVXXGXWGF--GXAXXAXXXGGV 742
G G G G GG G +GGG GG GGG G G G G + GG
Sbjct: 10 GRGGSRGGRGGFNGGRGGFGGGR--GGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGA 67
Query: 741 XG 736
G
Sbjct: 68 KG 69
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.143 0.505
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,069
Number of Sequences: 5004
Number of extensions: 34747
Number of successful extensions: 341
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 611599874
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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