Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_F21
(1044 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 38 0.003
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.12
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.47
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 5.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 7.6
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 37.5 bits (83), Expect = 0.003
Identities = 29/125 (23%), Positives = 34/125 (27%), Gaps = 2/125 (1%)
Frame = +2
Query: 470 SPPXXAKXXXXPXT-PXNPPPHPXXQXXXPAXPPPPPXPXXXXXXXXXXXXXXXXXXXXA 646
+PP P P + PP P P+ PPP P P
Sbjct: 1031 APPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSG 1090
Query: 647 XXXXPPKNTHPPPXXXRXXAXPXXHXXXGAPXGXTPP-XXPXXRXXPXSPXDPPPXXXXP 823
P + PP A P GAP P P +P P P P
Sbjct: 1091 IPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAP 1150
Query: 824 PXXXP 838
P P
Sbjct: 1151 PVPAP 1155
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.3 bits (70), Expect = 0.12
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 503 PXTPXNPPPHPXXQXXXPAXPPPPPXP 583
P P PPP P + P+ PPPPP P
Sbjct: 6 PGNPPPPPPPPGFEP--PSQPPPPPPP 30
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.47
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Frame = +2
Query: 476 PXXAKXXXXPXTPX--NPPPHPXXQXXXPAXPPPPPXP 583
P A P P PPP P A PPPPP P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 29.9 bits (64), Expect = 0.62
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 512 PXNPPPHPXXQXXXPAXPPPPP 577
P PPP P P PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +2
Query: 464 SXSPPXXAKXXXXPXTPXNPPPHPXXQXXXPAXPPPPP 577
S PP A P P P P P PPPPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +2
Query: 470 SPPXXAKXXXXPXTPXNPPPHPXXQXXXPAXPPPPPXP 583
SPP P P P P PPPPP P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 4.4
Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Frame = +2
Query: 464 SXSPPXX-AKXXXXPXTPXNPPPHPXXQXXXPAXPPPPPXP 583
S +PP A P PPP P PPPP P
Sbjct: 1696 SAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/34 (32%), Positives = 12/34 (35%)
Frame = +3
Query: 753 PPXXPPKXPXXXPXRIXPPXXXPPXXXHPXXXPP 854
PP P P + PP PP P PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 5.8
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = +2
Query: 473 PPXXA--KXXXXPXTPXNPPPHPXXQXXXPAXPPPPPXP 583
PP A + P +P + PP P P+ PPP P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 7.6
Identities = 22/91 (24%), Positives = 26/91 (28%), Gaps = 5/91 (5%)
Frame = +2
Query: 677 PPPXXXRXXAXPXXHXXXGAPXGXTPPXXPXXRXXPXSPXDPPP-----XXXXPPXXXPX 841
PPP R A P G + P P R P + PPP PP P
Sbjct: 338 PPPPPPRSNAAGSIPLP---PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA 394
Query: 842 XXSSXXLXTXPIRXXSXXXXPXIXXXPXXXP 934
P+ S P + P P
Sbjct: 395 IPGRSAPALPPLGNASRTSTPPVPTPPSLPP 425
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +2
Query: 470 SPPXXAKXXXXPXTPXNPPPHPXXQXXXPAXPPPPPXP 583
+PP P P P P PA PPP P P
Sbjct: 446 APPLPPSAPIAPPLPAGMPAAPPLPPAAPA-PPPAPAP 482
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +1
Query: 751 PPPXPXXKXPXXXPXGSXPPSXXPP 825
PPP P P P + P S PP
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPP 1906
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.138 0.482
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,320,234
Number of Sequences: 5004
Number of extensions: 14875
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 547228964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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