Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_F15
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    27   2.8  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    27   3.7  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   8.6  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   8.6  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    26   8.6  

>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 411 SNPINNYTNNKIQHIFAQPYYQHVEHQ 331
           +NP+N  T N  Q+   QP YQ ++ +
Sbjct: 507 NNPVNPSTTNPFQNFLRQPSYQGMQFE 533


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 441 SVLLTCIRLASNPINNYTNNKIQHIFAQPYYQHVE 337
           ++LLT IR   +PIN   N   + + + P+Y+ ++
Sbjct: 342 AILLTAIREIPSPINAQANRARKVLSSTPHYEMID 376


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 486  NDISSNVLYFILMDFS-VLLTCIRLASNPINNYTNNKIQH 370
            N++  + ++F+L DFS VL T      N +N  T+  I++
Sbjct: 1606 NNLKQSEIWFVLNDFSLVLATICSCLGNLLNLVTDEDIEN 1645


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -2

Query: 441 SVLLTCIRLASNPINNYTNNKIQHIFAQPYYQHV 340
           S++ +C+ L  N   NY    +  +  QPY + +
Sbjct: 643 SIIKSCLLLVQNAYGNYLVQHVLELNIQPYTERI 676


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 265 SDMSNVRHQCPQRPTELKMISSLMFNVLIIWLCK 366
           +D+S ++H     PT    + SL+F++ +I+ C+
Sbjct: 28  ADVSAIKHPEEVHPTNRDFLRSLIFSISMIFGCE 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,414,704
Number of Sequences: 5004
Number of extensions: 70255
Number of successful extensions: 176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)