Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_F14
         (1069 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    30   2.4  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    30   2.4  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   5.7  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   5.7  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   5.7  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   7.5  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   7.5  

>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = -2

Query: 849 GGGGXXXPXXXKXXGXFXXXXXGXGGGVXXXPPPQKGGG 733
           GGGG   P      G       G GGG    PPP   GG
Sbjct: 43  GGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGG 81


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = -2

Query: 849 GGGGXXXPXXXKXXGXFXXXXXGXGGGVXXXPPPQKGGG 733
           GGGG   P      G       G GGG    PPP   GG
Sbjct: 43  GGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGG 81


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +2

Query: 737 PPFXGGGXXXTPPPXPXXXXXKXPXXXXXXGXXXPPPP 850
           PP  GG     PPP         P      G   PPPP
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +2

Query: 737 PPFXGGGXXXTPPPXPXXXXXKXPXXXXXXGXXXPPPP 850
           PP  GG     PPP         P      G   PPPP
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +2

Query: 737 PPFXGGGXXXTPPPXPXXXXXKXPXXXXXXGXXXPPPP 850
           PP  GG     PPP         P      G   PPPP
Sbjct: 335 PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 372


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 14/39 (35%), Positives = 15/39 (38%)
 Frame = +2

Query: 734 PPPFXGGGXXXTPPPXPXXXXXKXPXXXXXXGXXXPPPP 850
           PPP    G    PPP P     + P      G   PPPP
Sbjct: 287 PPPPPSSGMWPPPPPPPPG---RTPGPPGMPGMPPPPPP 322


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 14/39 (35%), Positives = 15/39 (38%)
 Frame = +2

Query: 734 PPPFXGGGXXXTPPPXPXXXXXKXPXXXXXXGXXXPPPP 850
           PPP    G    PPP P     + P      G   PPPP
Sbjct: 297 PPPPPSSGMWPPPPPPPPG---RTPGPPGMPGMPPPPPP 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,972,020
Number of Sequences: 27780
Number of extensions: 192834
Number of successful extensions: 1021
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2856190974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)