Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_F11
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.43 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.43 
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    26   5.3  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXPXXV 697
           PPPP       PPPPP P  V
Sbjct: 13  PPPPGFEPPSQPPPPPPPGYV 33



 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 636 PPPPXXXXXXXXPPPXPPXXF 698
           PPPP        PPP PP  +
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGY 32



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 634 PPPPPXXXXXXXXPPPXP 687
           PPPPP        PPP P
Sbjct: 11  PPPPPPGFEPPSQPPPPP 28


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXPXXV 697
           PPPP       PPPPP P  V
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAV 785



 Score = 29.1 bits (62), Expect = 0.75
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXP 688
           PPPP       PPPPP P
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781



 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXPXXV 697
           P PP       PPPPP P  V
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGV 770



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 634 PPPPPXXXXXXXXPPPXP 687
           PPPPP        PPP P
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 634 PPPPPXXXXXXXXPPPXP 687
           PPPPP        PPP P
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 2   TVFPYRCHLIG-ESLKEXDWICFXXPKRSKANNIII 106
           TV P R +LI    LK+ DW+    P  S   N++I
Sbjct: 279 TVLPERKNLISLPLLKQDDWLSSSKPFGSSTPNVVI 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,611,179
Number of Sequences: 5004
Number of extensions: 21508
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)