Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_F11
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    27   0.52 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   2.8  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   2.8  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   2.8  
Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   3.7  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    29   3.7  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   3.7  
U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    29   3.7  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   3.7  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF067219-3|AAC17027.1|   74|Caenorhabditis elegans Hypothetical ...    28   8.7  

>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 26.6 bits (56), Expect(2) = 0.52
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPP 682
           PPPP       PPPPP
Sbjct: 540 PPPPVGMANGGPPPPP 555



 Score = 25.4 bits (53), Expect(2) = 1.9
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXP 688
           PPP        PPPPP P
Sbjct: 541 PPPVGMANGGPPPPPPLP 558



 Score = 23.8 bits (49), Expect(2) = 0.52
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 668 PPPPPXPXXVFFF 706
           PPPPP P   F F
Sbjct: 577 PPPPPPPPPSFMF 589



 Score = 23.0 bits (47), Expect(2) = 1.9
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 668 PPPPPXPXXVFFFF 709
           PPPPP P    F F
Sbjct: 576 PPPPPPPPPPSFMF 589


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXPXXVF 700
           PPPP       PPPPP P   F
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGF 780



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXP 688
           PPPP       PPPPP P
Sbjct: 758 PPPPPPPPGGCPPPPPPP 775



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXP 688
           PPPP       PPPPP P
Sbjct: 773 PPPPPGGFKGGPPPPPPP 790


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXPXXVF 700
           PPPP       PPPPP P   F
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGF 780



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXP 688
           PPPP       PPPPP P
Sbjct: 758 PPPPPPPPGGCPPPPPPP 775



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXP 688
           PPPP       PPPPP P
Sbjct: 773 PPPPPGGFKGGPPPPPPP 790


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXPXXVF 700
           PPPP       PPPPP P   F
Sbjct: 342 PPPPPPPGGCPPPPPPPPPGGF 363



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXP 688
           PPPP       PPPPP P
Sbjct: 341 PPPPPPPPGGCPPPPPPP 358



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXP 688
           PPPP       PPPPP P
Sbjct: 356 PPPPPGGFKGGPPPPPPP 373


>Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical
           protein ZC168.5 protein.
          Length = 172

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXP 688
           PPPP       PPPPP P
Sbjct: 43  PPPPCGGGYEAPPPPPPP 60


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXP 688
           PPPP       PPPPP P
Sbjct: 287 PPPPPSSGMWPPPPPPPP 304


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXP 688
           PPPP       PPPPP P
Sbjct: 65  PPPPPPPPMCPPPPPPMP 82



 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 629 FXPPPPXXXXXXXPPPPP 682
           F PPPP       PPPPP
Sbjct: 55  FCPPPPMCPPPPPPPPPP 72


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXP 688
           PPPP       PPPPP P
Sbjct: 72  PPPPPPPMPCPPPPPPMP 89


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXP 688
           PPPP       PPPPP P
Sbjct: 297 PPPPPSSGMWPPPPPPPP 314


>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXP 688
           PPPP       PPPPP P
Sbjct: 41  PPPPPMCGCAPPPPPPPP 58



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXP 688
           PPPP       PPPPP P
Sbjct: 42  PPPPMCGCAPPPPPPPPP 59


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 635  PPPPXXXXXXXPPPPPXP 688
            PPPP       PPPPP P
Sbjct: 1345 PPPPSDDLTPVPPPPPPP 1362


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXP 688
           PPPP       PPPPP P
Sbjct: 578 PPPPPPPMLGGPPPPPPP 595



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 635 PPPPXXXXXXXPPPPPXP 688
           PPPP       PPPPP P
Sbjct: 579 PPPPPPMLGGPPPPPPPP 596


>AF067219-3|AAC17027.1|   74|Caenorhabditis elegans Hypothetical
           protein R12E2.6 protein.
          Length = 74

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 628 FXPPPPPXXXXXXXXPPPXP 687
           F PPPPP        PPP P
Sbjct: 47  FGPPPPPFGPVGYALPPPPP 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,321,942
Number of Sequences: 27780
Number of extensions: 199125
Number of successful extensions: 2198
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)