Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_F10
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    36   0.006
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    33   0.057
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    31   0.17 
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc...    31   0.23 
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    31   0.30 
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    30   0.40 
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    29   0.70 
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    29   0.70 
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    29   0.92 
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    29   0.92 
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    29   1.2  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    28   2.1  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    26   6.5  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    26   6.5  
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    26   6.5  

>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +3

Query: 213 TWEQLRMLESTFEKTNYIHVSHRRELAQKLGIDEKCIRNWFQNRRMKKK----RQSSESS 380
           T +QL  L   F K      + R ++ ++L I E+ +  WFQNRR K K    RQ  E  
Sbjct: 174 TADQLAYLLREFSKDTNPPPAIREKIGRELNIPERSVTIWFQNRRAKSKLISRRQEEERQ 233

Query: 381 DSLAEPETMN 410
             L E   ++
Sbjct: 234 RILREQRELD 243


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 33.1 bits (72), Expect = 0.057
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +3

Query: 396 PETMNPQPSSNSPVINPDYNFVLPSNHG--ENLYATSDAAQTSTNSLDAELCYDTNMNYT 569
           P    P PSS    +  +    +PS +G   NLY  S+++    N L         +NY 
Sbjct: 299 PSMTGPVPSS----MGSEATLNMPSTYGIDSNLYTNSNSSSIVQNPLQPARTGPAAINYN 354

Query: 570 YTQYYPINTLTYNSPVQD 623
           YT  Y +++ +  +P  D
Sbjct: 355 YTTNYSVSSPSVTNPFFD 372


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 348 MKKKRQSSESSDSLAEPETMNPQPSSNS-PVINPDYNFVLPSNHGENLYATSDAAQTSTN 524
           ++  +Q + SS S A P +   +  SN  PV+ P ++    +N G N        +T +N
Sbjct: 195 LESSQQKAPSSSSTATPASAASEIISNKDPVVEPTHSASNAANSGSNTIRARQTTRTRSN 254

Query: 525 SL 530
           +L
Sbjct: 255 TL 256


>SPBC21B10.13c |||transcription factor, homeobox type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +3

Query: 231 MLESTFEKTNYIHVSHRRELAQKL--GIDEKCIRNWFQNRRMKKKRQSSESSDSL 389
           +LE  F KT    +  R+EL++KL   +  + ++ WFQN+R   +R +  S + L
Sbjct: 47  LLEQYFLKTPKPSLIERQELSKKLKSSMTPRELQIWFQNKRQSLRRSNCLSRNRL 101


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
 Frame = +3

Query: 336 QNRRMKKKRQSSESSDSLAEPETMNPQPSSNSPVINPDYNFVLPSNHGENLYA---TSDA 506
           Q ++ +K++  S  S + A P   N Q  + + V N  Y F   +N G N  A   T + 
Sbjct: 376 QLKKKRKRKAKSMVSGNQALPGEANFQSLNQNNVRN--YPFY-QTNQGSNPPAKRFTQEP 432

Query: 507 AQTSTNSL-DAELCYDTNMNYTYTQYYPINTLTYNSPVQDTSCQYYEKNN 653
             +S  SL ++ + Y T     Y   YP  +     P+ + S  YY + N
Sbjct: 433 PSSSLYSLSESSINYSTQSPMYYNYNYPQPSFPPFHPIYNDSIGYYSQAN 482


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +3

Query: 366 SSESSDSLAEPETMNPQPSSNSPVINPDYNFVLPSNHGENLYATSDAAQTSTNSLDAELC 545
           SS SSDS +E  + +   SSNS     D +     +  E+    SD+  +S++S  +   
Sbjct: 255 SSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSS 314

Query: 546 YDTNMN 563
            D N N
Sbjct: 315 EDGNSN 320


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 354 KKRQSSESSDSLAEPETMNPQPSSNSPVINPDYNFVLPSNHGENLYATSDAAQTSTN 524
           + RQS             +P  S+NS   N  Y++ +PSN+     A+  AA T TN
Sbjct: 36  RSRQSYHQRTKTPRSSYDSPSSSTNSKEHNSPYHYRVPSNNSTR--ASFGAASTDTN 90


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = +3

Query: 369 SESSDSLAEPETMNPQPSSNSPVINPDYNFVLPSNHGENLYATSDAAQTSTNSLDAELCY 548
           S S+DSLA     +  PSS  PV + D++++ PS+  + +  TS A   +T+       Y
Sbjct: 2   SISNDSLASTVPGDELPSSY-PVFSSDFSYIKPSHVLDVVTVTSTAGPEATDDPSYSGFY 60

Query: 549 DT 554
            T
Sbjct: 61  ST 62


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +3

Query: 243 TFEKTNYIHVSHRRELAQKLGIDEKCIRNWFQNRRMKKKRQSSESSDSLAEPETMNPQPS 422
           +F+  +YI+  HR  L  K   D + +RNW  +  + ++   S S+ S +  ++  P   
Sbjct: 2   SFQNPSYINAKHRSFLQPKDTQDSQDLRNWVSHSSVDEETAYSSSTLSSSSSKSF-PCYD 60

Query: 423 SNSPVINPD 449
               + +PD
Sbjct: 61  EYDEIKSPD 69


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 26/79 (32%), Positives = 39/79 (49%)
 Frame = +3

Query: 327 NWFQNRRMKKKRQSSESSDSLAEPETMNPQPSSNSPVINPDYNFVLPSNHGENLYATSDA 506
           N FQ R++     +S S DSL E E+    PS+    I+P   F  PS        +SDA
Sbjct: 473 NNFQQRKLTPL-PNSMSFDSLNEFESERNTPSTYGQNISPLPQFSSPS-------LSSDA 524

Query: 507 AQTSTNSLDAELCYDTNMN 563
             T++NS ++ L +   +N
Sbjct: 525 FLTNSNSSESALVHMQKLN 543


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
 Frame = +3

Query: 366 SSESSDSLAEPETMNPQPSSNSPVINPDYNFVLPS-NHGENLYATSDAAQTSTNSLDAEL 542
           SSE SDS +   T+    S NSP ++        S    E+ Y +S     ++ +  + L
Sbjct: 187 SSEPSDSSSSTNTVILTTSVNSPAVSSSETLTSVSITSTESAYTSSSVDIAASTTASSTL 246

Query: 543 CYDTN-MNYTYTQYYPINTLTYNSPVQDTSCQYYEKNN 653
              T+    +++   P    T +SP   +S    E ++
Sbjct: 247 PVSTSEATVSFSTDIPATPSTLSSPASSSSSYLVETSS 284


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 182 EEMQTFTDKLYMGTITDVREYIREDKLHSRKPPARASSEIGH 307
           EE   F   L    I D+R  +  D ++SR   + A S  GH
Sbjct: 400 EEQDEFLQSLSQEEIDDLRAMVHSDHIYSRLTNSLAPSVYGH 441


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 564 SSYWCRNKVLHRVN 523
           S YWCR++  HRV+
Sbjct: 391 SEYWCRSRKFHRVD 404


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 471 NHGENLYATSDAAQTSTNSLDAELCYDTNMN 563
           N+ +N  AT+D  Q +T+++   + Y  NM+
Sbjct: 805 NNVDNTQATTDNTQANTDNMQVAIDYSQNMD 835


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
 Frame = +2

Query: 134 HSSGMRYKKRVHKNYKEEMQTFTDKLYMGTITD--VREYIREDKLHSRKPPARASSEIGH 307
           HS   + ++ + + + EE++  T+KLY    T+  +   I +D  HS       S+++  
Sbjct: 331 HSDFPKLREMLIRTHLEELKEQTNKLYEAYRTERLLSSGISQD--HSVFREVNPSAKLEE 388

Query: 308 *RKMHQKLVPK*ENEKEKAIFRVK 379
            R +H++ + K E E  K IF  K
Sbjct: 389 ERALHEEKLMKMEAEM-KTIFSQK 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,643
Number of Sequences: 5004
Number of extensions: 67032
Number of successful extensions: 226
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)