Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_F07
         (876 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   4.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   7.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   9.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 173 GGGGGGPPXPXXPPGG 220
           GGGGG       PPGG
Sbjct: 524 GGGGGSGSGNNQPPGG 539



 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -1

Query: 252 GGGGGXXXXTXPPGG 208
           GGGG       PPGG
Sbjct: 525 GGGGSGSGNNQPPGG 539


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +2

Query: 185 GGPPXPXXPPGGXVLXXXPP 244
           GGPP    PP G      PP
Sbjct: 66  GGPPSGGQPPQGMPYPRFPP 85


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 308 PPPPPPK 328
           PPPPPP+
Sbjct: 732 PPPPPPR 738



 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 308 PPPPPPKK 331
           PPPPPP +
Sbjct: 731 PPPPPPPR 738



 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 675 PPPPPPXK 698
           PPPPPP +
Sbjct: 731 PPPPPPPR 738


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +2

Query: 194 PXPXXPPGGXVLXXXPPPP 250
           P P  PP G +    PP P
Sbjct: 160 PGPALPPTGFLCNNYPPLP 178


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,513
Number of Sequences: 336
Number of extensions: 3787
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)