Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_F07
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.031
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.22 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   1.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.031
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +1

Query: 184 GGXPPPXXXPXGXGXGXXXPPPPP 255
           GG PPP   P   G G   PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 31.9 bits (69), Expect = 0.12
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 242 GXXXPXPXPXGXXXGGGXPPPPPP 171
           G   P P P G    G  PPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.9 bits (64), Expect = 0.50
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -2

Query: 245 GGXXXPXPXPXGXXXGGGXPPPPPP 171
           GG   P P P     G   PPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.5 bits (63), Expect = 0.66
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 230 PXPXPXGXXXGGGXPPPPPP 171
           P P P      GG PPPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPP 767



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/58 (31%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
 Frame = +1

Query: 526 KKXXXRKXPPPXPLFFXXPP---PXPPXXFXXXXGGGFFXPPXFFXXKXXPXXPPPPP 690
           +K   +  PPP P      P   P P        GG    PP        P  PPPPP
Sbjct: 725 QKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 183 GGXPPXPXXPXGGXXWXXXPPPPP 254
           GG PP P  P         PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = +2

Query: 194 PXPXXPPGGXVLXXXPPPPPXKKXXXFXFXFFFFXXXXPPPPPP 325
           P P  PP   +    PPPPP                  PPPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGA--------GPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 230 PXPXPXGXXXGGGXPPPPPP 171
           P P P     GG  PPPPPP
Sbjct: 750 PVPPP-APIMGGPPPPPPPP 768


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 185 GGPPXPXXPPGGXVLXXXPPPPP 253
           G PP P  PPG       PPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 242 GXXXPXPXPXGXXXGGGXPPPPPP 171
           G   P P P G       PPPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 187 GXPPPXXXPXGXGXGXXXPPPPP 255
           G PPP   P G       PPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 220 PPXGXXGXGGXPPPPPP 170
           P  G    GG PPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPP 311


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 239 PPPPPXKKXXXFXFXFFFFXXXXPPPPPPK 328
           PPPPP +                PPPPPP+
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,873
Number of Sequences: 5004
Number of extensions: 41558
Number of successful extensions: 376
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)