Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_F05
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294...    30   2.1  
02_03_0106 + 15292869-15296138                                         29   4.9  

>03_05_0843 +
           28126480-28127007,28127092-28127457,28129388-28129487,
           28130266-28130546,28130643-28130705,28131276-28131431,
           28131913-28132080,28132158-28132298,28132714-28132840,
           28132888-28132994,28134142-28134372,28134446-28134559,
           28135091-28135261
          Length = 850

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +1

Query: 139 SKHSR*HFEHRRPIDSLYIKTSDARQSQNEIDRR 240
           S HS  H   R+PI  +++K S  R+S+++ DRR
Sbjct: 157 SAHSNGHHLPRKPIGEIHLKVSSVRESRSD-DRR 189


>02_03_0106 + 15292869-15296138
          Length = 1089

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 273 NLHXKELTDIISSINFILRLSCVTCFNIQRINR-PTVLKVL 154
           NL   ++ DI SSI F++ L  ++  N QR+ R P  ++ L
Sbjct: 605 NLDETQVRDIPSSIGFLINLETLSLQNCQRLQRLPWTVRAL 645


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,819,986
Number of Sequences: 37544
Number of extensions: 432981
Number of successful extensions: 942
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)