Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_F05
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.9  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   8.6  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   8.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   8.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.6  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 688 NKALLMFVSCDLIS*NMFFFYCPCR 614
           N  + M++SC       F  YCP R
Sbjct: 410 NAGMWMWLSCSSFFQQFFHCYCPVR 434


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 65  PQERGGTKILRIPYSGXXWK 6
           P+E GG K+L +P S   W+
Sbjct: 94  PKEYGGVKMLHVP-SDHIWR 112


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 65  PQERGGTKILRIPYSGXXWK 6
           P+E GG K+L +P S   W+
Sbjct: 94  PKEYGGVKMLHVP-SDHIWR 112


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 601 VCSCAYKGNKKKTC 642
           VC   Y  NKKK C
Sbjct: 72  VCRLGYLRNKKKVC 85


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 601 VCSCAYKGNKKKTC 642
           VC   Y  NKKK C
Sbjct: 72  VCRLGYLRNKKKVC 85


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 367 PVTEQDALSQINVKRCLKQT 426
           P T QD L    ++RCL +T
Sbjct: 388 PATFQDTLEMKYLERCLLET 407


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 582  WLPSPMDFSNARGGAKSLPTIL 517
            W P P   S    GA ++PTIL
Sbjct: 1164 WNPPPFMPSPFMAGAPNVPTIL 1185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,988
Number of Sequences: 438
Number of extensions: 4477
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)