Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_F04
(891 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023838-7|CAE47473.1| 357|Caenorhabditis elegans Hypothetical ... 75 9e-14
AL023838-6|CAB61038.2| 395|Caenorhabditis elegans Hypothetical ... 75 9e-14
AF061201-1|AAD10194.1| 357|Caenorhabditis elegans RAD51 short i... 75 9e-14
AB011382-1|BAA24982.1| 357|Caenorhabditis elegans RecA/Rad51/Dm... 75 9e-14
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 33 0.21
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical... 33 0.21
AF068709-4|AAC19253.2| 297|Caenorhabditis elegans Serpentine re... 31 0.84
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 31 1.1
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 31 1.1
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 31 1.1
U64858-8|AAB18286.3| 288|Caenorhabditis elegans Serpentine rece... 29 3.4
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ... 29 3.4
AF077533-2|AAP40529.1| 972|Caenorhabditis elegans Hypothetical ... 29 3.4
AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical ... 29 3.4
U80442-4|AAB37667.1| 226|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr... 28 7.8
U37429-11|AAA79352.1| 312|Caenorhabditis elegans Hypothetical p... 28 7.8
>AL023838-7|CAE47473.1| 357|Caenorhabditis elegans Hypothetical
protein Y43C5A.6b protein.
Length = 357
Score = 74.5 bits (175), Expect = 9e-14
Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 4/195 (2%)
Frame = +1
Query: 202 TATELWQKETCLPSIPTFSQNLDHILANGGVQLGSLTELLGLPGTGKTQLCLQLCASVQI 381
T E+ K + L I T S +LD +L GG++ GS+TE+ G TGKTQLC L Q+
Sbjct: 104 TGAEVHVKRSQLVQIRTGSASLDRLLG-GGIETGSITEVYGEYRTGKTQLCHSLAVLCQL 162
Query: 382 PKVLSGLNAEALYIDTNTNFTPTRFKEILTASLLKCQKIEPSYLFNEEEALDRLHYINAF 561
P + G + +YIDTN F P R I+ I Y + L+ + A+
Sbjct: 163 PIDMGGGEGKCMYIDTNATFRPER---IIA--------IAQRYNMDSAHVLENIAVARAY 211
Query: 562 GIEKFCACMNRISVFLAEHPRVKLIVIDSITFPFKEGIS----VQKRTGLLFRQMADLQR 729
E A + R ++E R ++++D T F+ + + +R L + L +
Sbjct: 212 NSEHLMALIIRAGAMMSE-SRYAVVIVDCATAHFRNEYTGRGDLAERQMKLSAFLKCLAK 270
Query: 730 IAMEGLIAVVLVNEM 774
+A E +AV++ N++
Sbjct: 271 LADEYGVAVIITNQV 285
>AL023838-6|CAB61038.2| 395|Caenorhabditis elegans Hypothetical
protein Y43C5A.6a protein.
Length = 395
Score = 74.5 bits (175), Expect = 9e-14
Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 4/195 (2%)
Frame = +1
Query: 202 TATELWQKETCLPSIPTFSQNLDHILANGGVQLGSLTELLGLPGTGKTQLCLQLCASVQI 381
T E+ K + L I T S +LD +L GG++ GS+TE+ G TGKTQLC L Q+
Sbjct: 142 TGAEVHVKRSQLVQIRTGSASLDRLLG-GGIETGSITEVYGEYRTGKTQLCHSLAVLCQL 200
Query: 382 PKVLSGLNAEALYIDTNTNFTPTRFKEILTASLLKCQKIEPSYLFNEEEALDRLHYINAF 561
P + G + +YIDTN F P R I+ I Y + L+ + A+
Sbjct: 201 PIDMGGGEGKCMYIDTNATFRPER---IIA--------IAQRYNMDSAHVLENIAVARAY 249
Query: 562 GIEKFCACMNRISVFLAEHPRVKLIVIDSITFPFKEGIS----VQKRTGLLFRQMADLQR 729
E A + R ++E R ++++D T F+ + + +R L + L +
Sbjct: 250 NSEHLMALIIRAGAMMSE-SRYAVVIVDCATAHFRNEYTGRGDLAERQMKLSAFLKCLAK 308
Query: 730 IAMEGLIAVVLVNEM 774
+A E +AV++ N++
Sbjct: 309 LADEYGVAVIITNQV 323
>AF061201-1|AAD10194.1| 357|Caenorhabditis elegans RAD51 short
isoform protein.
Length = 357
Score = 74.5 bits (175), Expect = 9e-14
Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 4/195 (2%)
Frame = +1
Query: 202 TATELWQKETCLPSIPTFSQNLDHILANGGVQLGSLTELLGLPGTGKTQLCLQLCASVQI 381
T E+ K + L I T S +LD +L GG++ GS+TE+ G TGKTQLC L Q+
Sbjct: 104 TGAEVHVKRSQLVQIRTGSASLDRLLG-GGIETGSITEVYGEYRTGKTQLCHSLAVLCQL 162
Query: 382 PKVLSGLNAEALYIDTNTNFTPTRFKEILTASLLKCQKIEPSYLFNEEEALDRLHYINAF 561
P + G + +YIDTN F P R I+ I Y + L+ + A+
Sbjct: 163 PIDMGGGEGKCMYIDTNATFRPER---IIA--------IAQRYNMDSAHVLENIAVARAY 211
Query: 562 GIEKFCACMNRISVFLAEHPRVKLIVIDSITFPFKEGIS----VQKRTGLLFRQMADLQR 729
E A + R ++E R ++++D T F+ + + +R L + L +
Sbjct: 212 NSEHLMALIIRAGAMMSE-SRYAVVIVDCATAHFRNEYTGRGDLAERQMKLSAFLKCLAK 270
Query: 730 IAMEGLIAVVLVNEM 774
+A E +AV++ N++
Sbjct: 271 LADEYGVAVIITNQV 285
>AB011382-1|BAA24982.1| 357|Caenorhabditis elegans
RecA/Rad51/Dmc1-like protein protein.
Length = 357
Score = 74.5 bits (175), Expect = 9e-14
Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 4/195 (2%)
Frame = +1
Query: 202 TATELWQKETCLPSIPTFSQNLDHILANGGVQLGSLTELLGLPGTGKTQLCLQLCASVQI 381
T E+ K + L I T S +LD +L GG++ GS+TE+ G TGKTQLC L Q+
Sbjct: 104 TGAEVHVKRSQLVQIRTGSASLDRLLG-GGIETGSITEVYGEYRTGKTQLCHSLAVLCQL 162
Query: 382 PKVLSGLNAEALYIDTNTNFTPTRFKEILTASLLKCQKIEPSYLFNEEEALDRLHYINAF 561
P + G + +YIDTN F P R I+ I Y + L+ + A+
Sbjct: 163 PIDMGGGEGKCMYIDTNATFRPER---IIA--------IAQRYNMDSAHVLENIAVARAY 211
Query: 562 GIEKFCACMNRISVFLAEHPRVKLIVIDSITFPFKEGIS----VQKRTGLLFRQMADLQR 729
E A + R ++E R ++++D T F+ + + +R L + L +
Sbjct: 212 NSEHLMALIIRAGAMMSE-SRYAVVIVDCATAHFRNEYTGRGDLAERQMKLSAFLKCLAK 270
Query: 730 IAMEGLIAVVLVNEM 774
+A E +AV++ N++
Sbjct: 271 LADEYGVAVIITNQV 285
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 33.5 bits (73), Expect = 0.21
Identities = 28/103 (27%), Positives = 45/103 (43%)
Frame = +1
Query: 241 SIPTFSQNLDHILANGGVQLGSLTELLGLPGTGKTQLCLQLCASVQIPKVLSGLNAEALY 420
+IP +D IL NG ++ G + L G G TQ+ + +PK L L + Y
Sbjct: 719 AIPGLGTTIDVILVNGTMRAGDVIVLTGSDGAITTQV-----RELLMPKPLKELRVKNEY 773
Query: 421 IDTNTNFTPTRFKEILTASLLKCQKIEPSYLFNEEEALDRLHY 549
I R ++L +L K P Y+ + E+ +D L +
Sbjct: 774 IHYK-EVKGARGVKVLAKNLEKVLAGLPIYITDREDEVDYLRH 815
>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
protein Y54F10BM.2 protein.
Length = 1173
Score = 33.5 bits (73), Expect = 0.21
Identities = 28/103 (27%), Positives = 45/103 (43%)
Frame = +1
Query: 241 SIPTFSQNLDHILANGGVQLGSLTELLGLPGTGKTQLCLQLCASVQIPKVLSGLNAEALY 420
+IP +D IL NG ++ G + L G G TQ+ + +PK L L + Y
Sbjct: 839 AIPGLGTTIDVILVNGTMRAGDVIVLTGSDGAITTQV-----RELLMPKPLKELRVKNEY 893
Query: 421 IDTNTNFTPTRFKEILTASLLKCQKIEPSYLFNEEEALDRLHY 549
I R ++L +L K P Y+ + E+ +D L +
Sbjct: 894 IHYK-EVKGARGVKVLAKNLEKVLAGLPIYITDREDEVDYLRH 935
>AF068709-4|AAC19253.2| 297|Caenorhabditis elegans Serpentine
receptor, class t protein26 protein.
Length = 297
Score = 31.5 bits (68), Expect = 0.84
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 229 FLSATIPLQYGFYNYSYSDKFIFSCRH*VYFYVKFTFSN 113
++ IP+ YG Y ++ +FS R+ +FY F F N
Sbjct: 133 YVFIVIPIVYGLYFVFFTPTCVFSSRYYAWFYDPFIFPN 171
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 334 TGKTQLCLQLCASVQIPKVLSGLNAEAL-YIDTNTNFTPTRFKEILTASLLKCQKIEPSY 510
TG+T + L V P +SG +A + Y D + +K +LT LLK QKI +
Sbjct: 1762 TGETPMFLMHGRDVMGPLEMSGEDAVGINYADMD------EYKHLLTQELLKVQKIAKEH 1815
Query: 511 LFNEEEALDRL 543
E+E+ L
Sbjct: 1816 AMREQESYKSL 1826
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 334 TGKTQLCLQLCASVQIPKVLSGLNAEAL-YIDTNTNFTPTRFKEILTASLLKCQKIEPSY 510
TG+T + L V P +SG +A + Y D + +K +LT LLK QKI +
Sbjct: 1665 TGETPMFLMHGRDVMGPLEMSGEDAVGINYADMD------EYKHLLTQELLKVQKIAKEH 1718
Query: 511 LFNEEEALDRL 543
E+E+ L
Sbjct: 1719 AMREQESYKSL 1729
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 334 TGKTQLCLQLCASVQIPKVLSGLNAEAL-YIDTNTNFTPTRFKEILTASLLKCQKIEPSY 510
TG+T + L V P +SG +A + Y D + +K +LT LLK QKI +
Sbjct: 1676 TGETPMFLMHGRDVMGPLEMSGEDAVGINYADMD------EYKHLLTQELLKVQKIAKEH 1729
Query: 511 LFNEEEALDRL 543
E+E+ L
Sbjct: 1730 AMREQESYKSL 1740
>U64858-8|AAB18286.3| 288|Caenorhabditis elegans Serpentine
receptor, class t protein25 protein.
Length = 288
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 229 FLSATIPLQYGFYNYSYSDKFIFSCRH*VYFYVKFTFSN 113
+++ P+ YG Y ++ +FS R+ +FY F F N
Sbjct: 112 YIALLAPIIYGLYFVFFTPTCMFSSRYYAWFYDPFIFPN 150
>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
protein Y80D3A.2 protein.
Length = 1467
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +1
Query: 289 GVQLGSLTELLGLPGTGKTQLCLQLCASV 375
G+Q G LT ++G PGTGKT + +Q+ +++
Sbjct: 817 GMQPG-LTMVVGPPGTGKTDVAVQIISNI 844
>AF077533-2|AAP40529.1| 972|Caenorhabditis elegans Hypothetical
protein F54G2.1b protein.
Length = 972
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +1
Query: 370 SVQIPKVLSGLNAEALYIDTNTNFTPTRFKEILTASLLKCQKIEPSYLFNEEEALD 537
+V K++SGL AE + F P++ +L A++ C+++ S E+ +D
Sbjct: 729 TVYTQKIISGLEAEGFTQELQA-FIPSQLLHLLCAAINNCEQVRRSLNITEKLHMD 783
>AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical
protein F54G2.1a protein.
Length = 1126
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +1
Query: 370 SVQIPKVLSGLNAEALYIDTNTNFTPTRFKEILTASLLKCQKIEPSYLFNEEEALD 537
+V K++SGL AE + F P++ +L A++ C+++ S E+ +D
Sbjct: 713 TVYTQKIISGLEAEGFTQELQA-FIPSQLLHLLCAAINNCEQVRRSLNITEKLHMD 767
>U80442-4|AAB37667.1| 226|Caenorhabditis elegans Hypothetical
protein T20F5.5 protein.
Length = 226
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -2
Query: 881 TQFTRMDNSTRXLQRWXQASPNEPTTAPPDKPNLVLISFTSTTAIXPSMAIL 726
T FT + +T + +P EPT A P L S+ STT ++ ++
Sbjct: 166 TSFTVPEEATFNRSKSQSTAPKEPTPATPTATTLSGTSYVSTTGTPEAINVI 217
>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
protein ZC84.6 protein.
Length = 1474
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Frame = +3
Query: 783 IGFVRWCC-------GGLVGRRLGPSLQXTGTVVH 866
+G +WCC G + GR L PS+ GTV H
Sbjct: 310 VGSTQWCCPTVASVCGPVGGRPLDPSVNNRGTVYH 344
>U37429-11|AAA79352.1| 312|Caenorhabditis elegans Hypothetical
protein F09E5.12 protein.
Length = 312
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -3
Query: 889 PXPPNSLGWTTVPVXCNDGPRRRPTSPPQHHRTNP 785
P PPN WT P + P P P + R NP
Sbjct: 258 PLPPNRDHWTGHPTLYYNSPYSFPRRPRPNDRENP 292
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,654,986
Number of Sequences: 27780
Number of extensions: 453199
Number of successful extensions: 1168
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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