Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_F04
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   1.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   1.2  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              24   2.1  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   6.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.5  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   8.6  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 662 NGNVIESITINLTLGC 615
           NG+V+ SI I+LTL C
Sbjct: 145 NGSVLYSIRISLTLSC 160


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 662 NGNVIESITINLTLGC 615
           NG+V+ SI I+LTL C
Sbjct: 145 NGSVLYSIRISLTLSC 160


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +1

Query: 286 GGVQLGSLTELLGLPGTGKTQLCLQLCASV-QIPKVLSGLNAEALYIDTNTNF-TPTRFK 459
           G   L  + + +    T   +  L  C ++  +PK+ + L  E+L++   TNF   ++  
Sbjct: 97  GSTPLTFVNDTVSFTTTVSARFWLMDCRNIGAVPKMATELYEESLFVPYITNFIIYSKRM 156

Query: 460 EILTASL 480
           ++L A+L
Sbjct: 157 DVLEATL 163


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 382 PKVLSGLNAEALYIDTNTNFTPTRF 456
           PK++S L+    Y + N N+ P  +
Sbjct: 312 PKIISSLSNNYNYNNYNNNYKPLHY 336


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 840 TMXPGVAQRAHHSTTGQTQSCAHLIYQ 760
           TM P +    HH    QTQS  HL Y+
Sbjct: 342 TMGPTMGP-PHHHHHHQTQSLQHLHYR 367


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 382 PKVLSGLNAEALYIDTNTNFTPTRFKEI 465
           PK++S L+    Y + N N+ P  +  I
Sbjct: 312 PKIISSLSNNYNYNNYNNNYKPLYYNII 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,532
Number of Sequences: 438
Number of extensions: 5394
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)