Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_F03
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    53   7e-08
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    29   0.93 
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    27   5.0  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   6.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   8.7  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 52.8 bits (121), Expect = 7e-08
 Identities = 24/45 (53%), Positives = 30/45 (66%)
 Frame = +3

Query: 219 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVAR 353
           K+ ID T    D I DV  FEKYL + +KV+GKT NL + VVV+R
Sbjct: 11  KYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSR 55



 Score = 35.9 bits (79), Expect = 0.008
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +1

Query: 331 AITLSSPGXKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYF 504
           ++ +S  G  +K+A+ A I FS                  DWLRVV++    YELRY+
Sbjct: 50  SVVVSREG-SSKIAVIAHIDFSGRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYY 106


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 203 LDAFAADFATLHSFFASLLVQLGFLSRRF 117
           +D +  DFAT H+ + + L  +GFLS  F
Sbjct: 87  IDLYILDFATQHNLYVASLRNMGFLSLVF 115


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 52  IFAVFTVTALHVFVCHXWQ 108
           +F    VT +H + CH WQ
Sbjct: 470 LFLTIDVTIMHHYACHVWQ 488


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +3

Query: 264  DVGNFEKYLKEHVKVEGKTNNLSNHVVVARX*DESRYHRRHSFFKEVPE 410
            + GN +KY + ++KV GK ++   H       ++S+    +  F +V +
Sbjct: 955  EAGNLKKYDQPNLKVSGKNDSFVTHHTPGAFPNDSKNKELNRHFLKVDD 1003


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 219 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 329
           K   DC +  + ++  + N +K + +HV  E K + L
Sbjct: 819 KLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSEL 855


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,116
Number of Sequences: 5004
Number of extensions: 34838
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)