Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_E24
         (935 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.076
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.10 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.41 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.8  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.6  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   8.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.076
 Identities = 19/52 (36%), Positives = 19/52 (36%)
 Frame = +2

Query: 755 PPPXPXXPXXXXXXXXGGGXXGXPPPPGGGGXXSXXXXXXXPPPPPPXPXXS 910
           P P P            GG    PPPPG  G          PPPPPP P  S
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP-------PPPPPPPPAVS 786



 Score = 31.1 bits (67), Expect = 0.23
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 874 PPPPPXPXSXXXXPPXPPXP 933
           PPPPP P      PP PP P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781



 Score = 29.5 bits (63), Expect = 0.71
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 878 PPPPPPXPXXSXPXXPPXP 934
           PPPPPP P  +    PP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/60 (31%), Positives = 19/60 (31%)
 Frame = +1

Query: 754 PPPXPPXXXXXXXXGXXGXXXGXPPXXRXGGXSFXXXXXXPPPPPXPXSXXXXPPXPPXP 933
           PPP PP                 PP    GG         PPPPP        PP PP P
Sbjct: 732 PPPPPPAVIVPTPA--PAPIPVPPPAPIMGGPP------PPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
 Frame = -3

Query: 846 PPPPG--GGGXPXXPPP 802
           PPPPG  G G P  PPP
Sbjct: 765 PPPPGVAGAGPPPPPPP 781


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 878 PPPPPPXPXXSXPXXPPXP 934
           PPPPPP P    P  PP P
Sbjct: 9   PPPPPPPPGFEPPSQPPPP 27



 Score = 28.3 bits (60), Expect(2) = 0.34
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 874 PPPPPXPXSXXXXPPXPPXP 933
           PPPPP        PP PP P
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 874 PPPPPXPXSXXXXPPXPPXP 933
           PPPPP P       P PP P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 867 PXXXPPPXPQXXXXXXPXPPPPP 935
           P   PPP P         PPPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPP 28



 Score = 20.6 bits (41), Expect(2) = 0.34
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 751 PPPPXPP 771
           PPPP PP
Sbjct: 9   PPPPPPP 15


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 20/68 (29%), Positives = 20/68 (29%), Gaps = 9/68 (13%)
 Frame = +2

Query: 752 PPPPXPXXPXXXXXXXXGGGXXGXPPPPGGGGXX---------SXXXXXXXPPPPPPXPX 904
           PPPP P             G    PPPP               S       P PPP  P 
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397

Query: 905 XSXPXXPP 928
            S P  PP
Sbjct: 398 RSAPALPP 405



 Score = 29.9 bits (64), Expect = 0.54
 Identities = 18/60 (30%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
 Frame = +2

Query: 752 PPPPXPXXPXXXXXXXXGGGXXGX-----PPPPGGGGXXSXXXXXXXPPPPPPXPXXSXP 916
           PPPP P           G G         PPPP      S          PPP P  S P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370



 Score = 29.1 bits (62), Expect = 0.94
 Identities = 18/61 (29%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
 Frame = +2

Query: 752 PP--PPXPXXPXXXXXXXXGGGXXGXPPPPGGGGXXSXXXXXXXPPPPPPXPXXSXPXXP 925
           PP  PP P  P               PPP       +       PPPPPP P       P
Sbjct: 267 PPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPP-PSRRNRGKP 325

Query: 926 P 928
           P
Sbjct: 326 P 326


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect(2) = 1.3
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +2

Query: 827 PPPGGGGXXSXXXXXXXPPPPPPXP 901
           PP       S       PPPPPP P
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPPPP 197



 Score = 21.0 bits (42), Expect(2) = 1.3
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 878 PPPPPPXPXXSXP 916
           P PPPP P    P
Sbjct: 236 PAPPPPPPPTLPP 248


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 874  PPPPPXPXSXXXXPPXPPXP 933
            P PPP P S    P  PP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMP 1724



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
 Frame = +2

Query: 824  PPPPGGGGXXSXXXXXXXPP--PPPPXPXXSXPXXP 925
            PPP       S       PP  PPPP P  S P  P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 803 GGGXXGXPPPPGGGG 847
           GGG  G PP PGG G
Sbjct: 194 GGGSGGPPPGPGGFG 208


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 878 PPPPPPXPXXSXPXXPPXP 934
           PPPP P P  + P  P  P
Sbjct: 358 PPPPMPAPIYNVPNVPTVP 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,470,245
Number of Sequences: 5004
Number of extensions: 19266
Number of successful extensions: 294
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)