Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_E23
         (935 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0788 + 28064684-28066584,28066692-28066815,28066908-280672...    30   3.0  

>04_04_0788 +
           28064684-28066584,28066692-28066815,28066908-28067285,
           28067286-28067488,28067615-28067897
          Length = 962

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
 Frame = +3

Query: 396 GRGGLXFXXSSPXXGGXXXSLSXKKXPP-----PPXXXGGXXXXPPXQAITXETTCEQXA 560
           G G +    SSP  GG   S S K  PP     P    GG     P   +      +Q A
Sbjct: 83  GSGSVSSASSSPGGGGNGESFSFKNRPPQSPASPAMSVGGEGSDDPPTRLIGSFLRKQAA 142

Query: 561 GGG 569
            GG
Sbjct: 143 AGG 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,285,062
Number of Sequences: 37544
Number of extensions: 373459
Number of successful extensions: 536
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)