Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_E21
         (919 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    28   0.14 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   5.1  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   9.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   9.0  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 0.14
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 460 LRLQQARAFVRPFASRRPFHVARHCFATQ 374
           +RL  ARAF+ PF +R   HV  +   T+
Sbjct: 261 VRLSSARAFITPFENRSNLHVIVNATVTK 289


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -3

Query: 248 PSNKCEIIFKSKIHSPIATPMCFWAFLSDVNTPYGKFSIGKSESDE 111
           PSN+  I   +       T +CF++ L D  T  G++ +   E  E
Sbjct: 372 PSNEETIDINNGAELMQETHVCFFSLLRDAFTSKGEYRMSTGEMKE 417


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 701 PTSSSKSISLQGPKWG 654
           P+SS+KS  L+GP+ G
Sbjct: 199 PSSSTKSYVLEGPRNG 214


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 801 TPVVQKHETKNFVFGVLGADXXPQLCGG 718
           TP++QKH   +   GV      P + GG
Sbjct: 316 TPLIQKHLKIHDTCGVHNLHGMPGILGG 343


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = +2

Query: 425 GTYKCTCLLKSEITQTSIRRCSTLP 499
           G Y C  +   ++ QT +    T+P
Sbjct: 378 GNYTCHAVRNQDVVQTHVLTIHTIP 402


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 270,235
Number of Sequences: 438
Number of extensions: 6646
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)