Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_E17
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Sch...    82   9e-17
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    28   2.2  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   5.0  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   8.7  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   8.7  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    26   8.7  

>SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 82.2 bits (194), Expect = 9e-17
 Identities = 43/118 (36%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
 Frame = +2

Query: 449 SQRQAITELAPTQPA-VDEEEETPEIDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRE 625
           +  +A  E A +  A V + E    I   + N+V + ++ C L+L+ IAL+  N E+  +
Sbjct: 29  ANNEATNETADSGDAEVSKNEGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPK 88

Query: 626 N-GMVTMKLRRPYTTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGFEVRFRTF 796
               V M++R P +TA I++SG++   G  SED +K+A+R+YAR +QKLGF  +F  F
Sbjct: 89  RFAAVIMRIREPKSTALIFASGKMVVLGGKSEDDSKLASRKYARIIQKLGFNAKFTDF 146


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +2

Query: 341 SKGTHGVVANHGISTHSVPTHMVPDHEYCETTAQTPSQRQAITELAPTQPAVDEEEETP 517
           SK T  ++ +H     +  T    + ++      TP QR+A T   P   A  ++ E P
Sbjct: 292 SKSTDNIIRSHSPVLLTPQTLSTSETKHIRPNNSTPYQRRAETSTKPKAVATPQKVEAP 350


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +2

Query: 350 THGVVANHGISTHSVPTHMVPDHEYCETTAQTPSQRQAITELAPTQPAVDEEEETPEIDI 529
           T  + AN  ++ HS P  +    E  +TT+    +   +T L+P +P+    EE     I
Sbjct: 395 TRPINANPHLTNHS-PNDLTNGEEEMDTTSAFNIENSHLTLLSPIRPSSRSMEE----QI 449

Query: 530 M-INNVVCSFSVKCHLN 577
           M +   + S +   HLN
Sbjct: 450 MDLTQPISSTNAPTHLN 466


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +2

Query: 335 ELSKGTHGVVANHGISTHSVPTHMVPDHEYCETTAQTPSQRQAITELAPTQPAVDEEEET 514
           E++KG  G+ +       S  TH  P+      T  TP  +  I   AP++PA     + 
Sbjct: 340 EINKG-EGITSGLRKVDKSEMTHKNPN---LRKTGPTPGPKPKIKSSAPSKPAETAPVKP 395

Query: 515 PEIDI 529
           P I++
Sbjct: 396 PRIEL 400


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +2

Query: 380 STHSVPTHMVPDHEYCETTAQTPSQRQ--AI-TELAPTQPAVDEEEETPEIDIMIN 538
           ST    T   P  E  ET  + P  +   A+ TE + T+P+   EE TP   +  N
Sbjct: 422 STPKEETEESPSTELPETGKEQPPNKAEPAVPTEASSTKPSEAAEESTPRFSVRPN 477


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 887 FXXXVXSLDFWRKKDPYANGILHVPNTL 804
           F     S++FW  +D    GIL +P+T+
Sbjct: 201 FGTDAGSVEFWDPRDRSRVGILEIPSTV 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,539,122
Number of Sequences: 5004
Number of extensions: 69534
Number of successful extensions: 247
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)