Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_E15
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...    43   6e-05
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...    43   6e-05

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +3

Query: 102 MSLVIPDKIQHILRIMNTNIDGNPXV 179
           MSLV+PD  QHILR++NTN+DG   V
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKV 26


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +3

Query: 102 MSLVIPDKIQHILRIMNTNIDGNPXV 179
           MSLV+PD  QHILR++NTN+DG   V
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKV 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,969,534
Number of Sequences: 5004
Number of extensions: 26803
Number of successful extensions: 46
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)