Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_E15
(838 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-11|CAB16517.1| 154|Caenorhabditis elegans Hypothetical p... 45 8e-05
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 0.77
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 5.4
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 28 7.2
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 28 7.2
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 28 9.5
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 28 9.5
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 28 9.5
>Z99281-11|CAB16517.1| 154|Caenorhabditis elegans Hypothetical
protein Y57G11C.16 protein.
Length = 154
Score = 44.8 bits (101), Expect = 8e-05
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +3
Query: 102 MSLVIPDKIQHILRIMNTNIDGNPXV 179
MSL+IP+K QHI R+MNTNIDGN V
Sbjct: 1 MSLIIPEKFQHIHRVMNTNIDGNRKV 26
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.5 bits (68), Expect = 0.77
Identities = 24/72 (33%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Frame = -2
Query: 534 FXXPXXFFXGXXKKXGGPXXF-PPPXGGXIFXG----PXKIXGGFXTPXGGXPXXFLTKK 370
F P F G + GGP + PPP GG G P GGF P G P +
Sbjct: 390 FAPPPSAF-GAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPP 448
Query: 369 KXLXPYWGPPWG 334
P PP G
Sbjct: 449 TGFPPVGAPPPG 460
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 397 PPXXGXKXPXNFGGAPKNXPPPXXGKXXGAP 489
PP G P N GAP + PP GAP
Sbjct: 401 PPSGGPPGPFNPSGAPPSGGPPGPFNPSGAP 431
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 397 PPXXGXKXPXNFGGAPKNXPPPXXGKXXGAP 489
PP G P N GAP + PP GAP
Sbjct: 416 PPSGGPPGPFNPSGAPPSGGPPGPFNPSGAP 446
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 397 PPXXGXKXPXNFGGAPKNXPPPXXGKXXGAP 489
PP G P N GAP + PP GAP
Sbjct: 431 PPSGGPPGPFNPSGAPPSGGPPGPFNPSGAP 461
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 397 PPXXGXKXPXNFGGAPKNXPPPXXGKXXGAP 489
PP G P N GAP + PP GAP
Sbjct: 446 PPSGGPPGPFNPSGAPPSGGPPGPFNPSGAP 476
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 397 PPXXGXKXPXNFGGAPKNXPPPXXGKXXGAP 489
PP G P N GAP + PP GAP
Sbjct: 221 PPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 251
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 397 PPXXGXKXPXNFGGAPKNXPPPXXGKXXGAP 489
PP G P N GAP + PP GAP
Sbjct: 251 PPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 281
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 397 PPXXGXKXPXNFGGAPKNXPPPXXGKXXGAP 489
PP G P N GAP + PP GAP
Sbjct: 341 PPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 371
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 397 PPXXGXKXPXNFGGAPKNXPPPXXGKXXGAP 489
PP G P N GAP + PP GAP
Sbjct: 461 PPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 491
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 397 PPXXGXKXPXNFGGAPKNXPPPXXGKXXGAP 489
PP G P N GAP + PP GAP
Sbjct: 491 PPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 521
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = -2
Query: 489 GGPXXFPPPXGGXIFXGPXKIXGGFXTPXGGXPXXFLTKKKXLXPYWGPP 340
GG PPP G + G G P GG P PY GPP
Sbjct: 675 GGGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPP 724
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = -2
Query: 489 GGPXXFPPPXGGXIFXGPXKIXGGFXTPXGGXPXXFLTKKKXLXPYWGPP 340
GG PPP G + G G P GG P PY GPP
Sbjct: 675 GGGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPP 724
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1
Query: 388 PXXPPXXGXKXPXNFGGAPKNXPPPXXGKXXGAP 489
P PP G P N GAP PPP GAP
Sbjct: 216 PAPPPPIGGIAPVNAHGAP--PPPPLPPVGAGAP 247
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1
Query: 388 PXXPPXXGXKXPXNFGGAPKNXPPPXXGKXXGAP 489
P PP G P N GAP PPP GAP
Sbjct: 202 PAPPPPIGGIAPVNAHGAP--PPPPLPPVGAGAP 233
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1
Query: 388 PXXPPXXGXKXPXNFGGAPKNXPPPXXGKXXGAP 489
P PP G P N GAP PPP GAP
Sbjct: 202 PAPPPPIGGIAPVNAHGAP--PPPPLPPVGAGAP 233
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,495,185
Number of Sequences: 27780
Number of extensions: 220120
Number of successful extensions: 455
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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